Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L21
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...   176   2e-44
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    35   0.080
Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical pr...    32   0.43 
Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical p...    28   9.2  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    28   9.2  
AF318614-1|AAK01102.1|  433|Caenorhabditis elegans ionotropic gl...    28   9.2  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    28   9.2  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    28   9.2  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    28   9.2  

>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score =  176 bits (428), Expect = 2e-44
 Identities = 81/142 (57%), Positives = 102/142 (71%), Gaps = 2/142 (1%)
 Frame = +3

Query: 399 PVXELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKXALDXLHKDIYQEIRHAAE 572
           P+ E FPDG FP G  +D  P   +G D R A +R ++EEK ALD  +++++Q+ R +AE
Sbjct: 81  PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138

Query: 573 AHRQTXKHIRNWIKPGMTMIXICEELXNTAXRLIGEDGLKAGLAFPTGCSRNHCAXHYTP 752
           AHRQ  K++++WIKPGMTMI ICE L  T+ RLI E GL+AGLAFPTGCS NHCA HYTP
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198

Query: 753 NTGDTTXLXYDDVLXIDFGTXI 818
           N GDTT L Y DV  ID+G  +
Sbjct: 199 NAGDTTVLQYGDVCKIDYGIHV 220


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
 Frame = +3

Query: 564 AAEAHRQTXKHIRNWIKPGMTMIXICEE-----LXNTAXRLIGEDGLKAGLAFPTGCSRN 728
           AAE      K +   IK G     +C+      L  T      E     G+A PT  S +
Sbjct: 35  AAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFTKGIAMPTCISID 94

Query: 729 HCAXHYTPNTGDT-TXLXYDDVLXIDFGTXI 818
           +C  HYTP   +    L    V+ +D GT I
Sbjct: 95  NCICHYTPLKSEAPVVLKNGQVVKVDLGTHI 125


>Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical
           protein ZK1128.5 protein.
          Length = 446

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 393 TIPVXELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKXALDXLHKDIYQEIRHAA 569
           ++P+ EL  +G   +   M H P  G + R A K +F+S  K  +  L KDIY    H  
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186

Query: 570 EAHR 581
           E HR
Sbjct: 187 EWHR 190


>Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 524 KSXFLLTCKTIFCSSLINTLSRTMVHNLTLRKVSIRK*FRYWYSRWDGLL 375
           K+  LL C + +C  L+N L+  +    TL KV   K      + W+GL+
Sbjct: 338 KNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTENGWNGLI 387


>Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 524 KSXFLLTCKTIFCSSLINTLSRTMVHNLTLRKVSIRK*FRYWYSRWDGLL 375
           K+  LL C + +C  L+N L+  +    TL KV   K      + W+GL+
Sbjct: 338 KNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTENGWNGLI 387


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 552 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 412
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 16  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62


>AF318614-1|AAK01102.1|  433|Caenorhabditis elegans ionotropic
           glutamate receptor NMR-2 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 524 KSXFLLTCKTIFCSSLINTLSRTMVHNLTLRKVSIRK*FRYWYSRWDGLL 375
           K+  LL C + +C  L+N L+  +    TL KV   K      + W+GL+
Sbjct: 45  KNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTENGWNGLI 94


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 552 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 412
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 13  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 552 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 412
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 22  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 552 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 412
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 15  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,564
Number of Sequences: 27780
Number of extensions: 241665
Number of successful extensions: 522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)