Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L20
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    33   0.31 
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563...    30   2.2  
12_01_0524 - 4167867-4168445                                           29   6.8  
02_05_0149 + 26290236-26290880                                         29   6.8  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   9.0  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   9.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.0  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 332 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 168
           H P AAA  P VP +    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>02_04_0654 -
           24755339-24755408,24755488-24755624,24756243-24756326,
           24756929-24756944,24758035-24758405
          Length = 225

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 805 PWPPXXXXPXLXGRCRPXXPPXXXAXVXXRPPPPP 909
           P PP    P +  R +P  P      V   PPPPP
Sbjct: 34  PPPPPPLFPAMSARPQPPRPAHPARFVKPMPPPPP 68


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -2

Query: 329 QPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 150
           QPS+AA  P     +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 149 CEERVDHEGQ*C 114
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>02_05_0149 + 26290236-26290880
          Length = 214

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -2

Query: 908 GGGGGRXXTXAXXXGGXXGRHRPXXXGXXXXGGQGXXG 795
           GGGGG     A   GG  G H P   G    GG G  G
Sbjct: 106 GGGGGGGSGRAYGFGGGYGGH-PGGFGGGGGGGGGGGG 142


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 805 PWPPXXXXPXLXGRCRPXXPPXXXAXVXXRPPPPP 909
           P PP    P L  R  P  P          PPPPP
Sbjct: 635 PPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPP 669


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 65  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 205
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 414 GRGERSPRRWLQPRLAVPRQASTSVPXTP 328
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,569
Number of Sequences: 37544
Number of extensions: 495620
Number of successful extensions: 1741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)