Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L18
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0524 - 4167867-4168445                                           31   0.91 
11_07_0003 - 27182551-27183054                                         31   1.6  
09_02_0278 + 6691685-6692188                                           31   1.6  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    29   4.8  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.5  

>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = -3

Query: 343 RQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIV 164
           RQPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V
Sbjct: 103 RQPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV 160

Query: 163 RCEERVDHEGQ*C 125
             EE  + E + C
Sbjct: 161 -VEEVEEEEEKEC 172


>11_07_0003 - 27182551-27183054
          Length = 167

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -1

Query: 816 GGXAXPRXGRXPXAPGXKSGXPXXXAXGPGRGLXKXXXGTXPXXAXHLATGPW 658
           GG   P   R   +PG  +G     A  PG G      GT P  A +  +G W
Sbjct: 80  GGVRSPATARA-GSPGGGTGTTLAGAGSPGGGRSPVGGGTIPAGAGNQGSGSW 131


>09_02_0278 + 6691685-6692188
          Length = 167

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -1

Query: 816 GGXAXPRXGRXPXAPGXKSGXPXXXAXGPGRGLXKXXXGTXPXXAXHLATGPW 658
           GG   P   R   +PG  +G     A  PG G      GT P  A +  +G W
Sbjct: 80  GGVRSPATARA-GSPGGGTGTTLAGAGSPGGGRSPVGGGTIPAGAGNQGSGSW 131


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 425 GRGERSPRRXLQPRLAVPRQASTSVPXTP 339
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,397,779
Number of Sequences: 37544
Number of extensions: 423796
Number of successful extensions: 1208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)