Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L17
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0267 - 22538631-22539452                                         33   0.39 
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    32   0.67 
11_06_0610 - 25449085-25453284                                         31   0.89 
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415...    29   3.6  
04_04_0267 + 24048649-24049140,24049521-24049835                       29   6.3  
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839...    28   8.3  
03_05_0171 + 21486473-21486775,21486835-21486912,21487223-214874...    28   8.3  
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141...    28   8.3  

>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 544 WWPSSPRAPCTARGSPPTRDSPPAT 618
           WWP SP +P  +    P R SPP++
Sbjct: 180 WWPCSPSSPPASPSPSPARTSPPSS 204


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 553 SSPRAPCTARGSPPTRDSPPATG*TSPS 636
           S  R+P   RGSPP R SPPA    SP+
Sbjct: 224 SRSRSPARDRGSPPRRRSPPARRERSPA 251


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 538 TAWWPSSP---RAPCTARGSPPTRDSPPATG*TSPSASGE 648
           + W P SP   +AP   +  PPT  SPPAT  +SP   G+
Sbjct: 516 SGWLPKSPERKKAP-PPQAEPPTEYSPPATPESSPPPEGK 554


>07_01_0559 +
           4151054-4151178,4151306-4153018,4153121-4153412,
           4154327-4154636,4155041-4155261
          Length = 886

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 54  LDASADCLESSTKT--CSVAQSILRAYFVLTDHEYGFQQFRKFVTKKREALGTFFK 215
           LDA+ADC  S+ K       Q + R +F+  + +  +++  K + K +     + K
Sbjct: 725 LDAAADCYTSALKIRHTRAHQGLARVHFLRNNRDAAYEEMTKLIEKAKNNASAYEK 780


>04_04_0267 + 24048649-24049140,24049521-24049835
          Length = 268

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 559 PRAPCTARGSPPTRDSPPATG*TSPSASG 645
           P+AP  +R  PP R SP A     PSA G
Sbjct: 6   PQAPRASRRPPPPRCSPAAGASPPPSAGG 34


>07_03_0615 +
           19983003-19983238,19983297-19983558,19983651-19983906,
           19983982-19984044,19984131-19984570
          Length = 418

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 749 PXPCGGWPXCLXPXPXPPPANXXKAPXXT 835
           P P G  P    P P PPP    +AP  T
Sbjct: 231 PVPTGPRPAAHVPRPTPPPHGGFRAPFST 259


>03_05_0171 +
           21486473-21486775,21486835-21486912,21487223-21487407,
           21487507-21487897
          Length = 318

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 547 WPSSPRAPCTARGSPPTRD---SPPATG*TSPSASGEDYVHHHE 669
           WP++PR  C + G+ P R+   +  A    SP    +   H HE
Sbjct: 41  WPAAPRLVCRSSGARPPRERAVAAAAAAANSPRQQQQLGEHEHE 84


>02_04_0435 +
           22912993-22913456,22913847-22914012,22914096-22914146,
           22914353-22914578,22915275-22915963,22916055-22916408
          Length = 649

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 141 QSVRNTLAVSTAPRSKFLC*TPDNLPRRRGKL 46
           Q ++ TLA +T P SK     PD+ P+R+ K+
Sbjct: 506 QELKRTLAETTPPSSKVSSRLPDSGPQRKEKI 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,984,901
Number of Sequences: 37544
Number of extensions: 449527
Number of successful extensions: 1640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)