Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L17
         (858 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF318272-1|AAK13420.1|  840|Drosophila melanogaster metabotropic...    30   4.7  
AE014134-2550|AAF53431.2|  836|Drosophila melanogaster CG15274-P...    30   4.7  

>AF318272-1|AAK13420.1|  840|Drosophila melanogaster metabotropic
           GABA-B receptor subtype1 protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 446 CGIFLCVA-ILQNXXQXHNRMIVSSHRVPQHVRHFG 342
           CGIF+  A I+ N    H R+I SSH V   +  FG
Sbjct: 478 CGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFG 513


>AE014134-2550|AAF53431.2|  836|Drosophila melanogaster CG15274-PA
           protein.
          Length = 836

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 446 CGIFLCVA-ILQNXXQXHNRMIVSSHRVPQHVRHFG 342
           CGIF+  A I+ N    H R+I SSH V   +  FG
Sbjct: 474 CGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFG 509


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,678,099
Number of Sequences: 53049
Number of extensions: 697495
Number of successful extensions: 2493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2492
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)