Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L17
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69902-4|CAA93763.1|  410|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.2  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    28   9.8  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    28   9.8  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 550 PSSPRAPCTARGSPPTRDSPPATG*TSPSAS 642
           P   R+P  +R   P R+ PPA    SPSAS
Sbjct: 388 PRRRRSPSKSRSPAPKREIPPARRRRSPSAS 418


>Z69902-4|CAA93763.1|  410|Caenorhabditis elegans Hypothetical
           protein C47D12.5 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/33 (39%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -2

Query: 395 NRMIVSSHRVPQHVRHFGYSQHGL-SDHRATLA 300
           +++IVSS  +PQ ++   Y+Q+G+ S+HR+ L+
Sbjct: 237 DQLIVSSPDLPQGIQFTNYNQNGVFSNHRSNLS 269


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 556 SPRAPCTARGSPPTRDSPPATG*TSPSASG 645
           SP  P   RGSPPT   PP     SP  +G
Sbjct: 296 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 556 SPRAPCTARGSPPTRDSPPATG*TSPSASG 645
           SP  P   RGSPPT   PP     SP  +G
Sbjct: 317 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 556 SPRAPCTARGSPPTRDSPPATG*TSPSASG 645
           SP  P   RGSPPT   PP     SP  +G
Sbjct: 302 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 550 PSSPRAPCTARGSPPTRDSPPATG*TSPSASGEDYVHHHE 669
           P + RAP   R  P T  +PPAT  T P+ + +  V   E
Sbjct: 309 PPATRAPPATRAPPATTRAPPAT--TRPAPASQPPVREPE 346


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 550  PSSPRAPCTARGSPPTRDSPPA 615
            PS+P+AP    G PP    PPA
Sbjct: 1000 PSAPKAPAGPGGPPPPPPPPPA 1021


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 550 PSSPRAPCTARGSPPTRDSPPA 615
           PS+P+AP    G PP    PPA
Sbjct: 239 PSAPKAPAGPGGPPPPPPPPPA 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,809,864
Number of Sequences: 27780
Number of extensions: 320138
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)