Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L17
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 48  AFLDASADCLESSTKTCSVAQSILRAYF 131
           AF+D +  C E+S K   V  S   +YF
Sbjct: 34  AFVDVTLACNEASLKAHKVVLSACSSYF 61


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 286 NIXMRXKYRXKHSALSSPG 230
           NI +  KYR +H    SPG
Sbjct: 130 NIWVPQKYRLRHKGDGSPG 148


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 286 NIXMRXKYRXKHSALSSPG 230
           NI +  KYR +H    SPG
Sbjct: 130 NIWVPQKYRLRHKGDGSPG 148


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 398 HNRMIVSSHRVPQHVRHFGY 339
           HN     SH  P  V++FGY
Sbjct: 314 HNATCYLSHVDPDVVQYFGY 333


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 398 HNRMIVSSHRVPQHVRHFGY 339
           HN     SH  P  V++FGY
Sbjct: 20  HNATCYLSHVDPDVVQYFGY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,006
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)