Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_L15
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.84
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.6
03_02_0111 + 5688649-5688942 29 5.9
08_02_0813 + 21459776-21461128 28 7.8
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 7.8
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 28 7.8
05_01_0493 + 4113869-4116728,4116859-4117370 28 7.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.8
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 7.8
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 364 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCXLARSSSVLG 516
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 395 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFALRSNSVVCRSNS 246
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +1
Query: 265 TELERRANGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 438
T L A AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 279 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 458
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 459 QL 464
+L
Sbjct: 289 EL 290
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -3
Query: 787 GVXXGGGQAXRREXKKXXPPTANXGXGPPXXCAGARXPEKHVEXLAXGXSTXPRS 623
G GG R ++ PP+A+ P GAR +E A G PR+
Sbjct: 206 GTPNDGGHGAARGSERCGPPSASDQDSVPFVGTGARGVGVDLELQARGGRRPPRA 260
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 594 TDLSSAVXSXDRGXVEXPXAXCSTCFSGXRAP--AHXLGGPXP 716
TD+ S+ S G + P CS+ G RA +H L P P
Sbjct: 737 TDIQSSSNSSSHGSFKSPCQTCSSSTHGERAATLSHKLADPMP 779
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 119 SSQRTIGSLPPHSKIVVNLTLHLRHANIRESESTVRILAD-LQMNWIDKRLSWNAGRMGL 295
+S R G+LPP NLT H N E R+ D L + ++D LS N G+
Sbjct: 493 ASNRLAGALPPEMSGCRNLTFVDLHDNAISGELPPRLFRDWLSLQYLD--LSDNVIAGGI 550
Query: 296 QHLAGVLGTLVE 331
G+L +L +
Sbjct: 551 PPEIGMLTSLTK 562
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 276 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 455
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 456 MQLDN 470
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,560,301
Number of Sequences: 37544
Number of extensions: 492835
Number of successful extensions: 1310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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