Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_L13
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 300 2e-82
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 169 6e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 161 2e-40
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 120 3e-28
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 88 2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 2e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 87 4e-18
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 48 2e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.21
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.48
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.48
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 300 bits (736), Expect = 2e-82
Identities = 138/161 (85%), Positives = 145/161 (90%)
Frame = +3
Query: 159 KLPRLVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRG 338
++ LV+ NGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG KDSYVGDEAQSKRG
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRG 63
Query: 339 ILTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIM 518
ILTLKYPIEHGIV NWDDM KIWHHTFYNELRVAPEEHP LLTEAPLNPK+NRE MT I+
Sbjct: 64 ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQII 123
Query: 519 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGXGVSTPCP 641
FETFN PA YVAIQAVLSLYASGRTTGIVLDSG GV+ P
Sbjct: 124 FETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVP 164
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 629 HTVPIYXGXAXPXPSXVWTYPVRP-PXYLMXIXXXR-XSFXTTAQ 757
HTVPIY G A P R YLM I R +F TTA+
Sbjct: 161 HTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAE 205
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 169 bits (410), Expect = 6e-43
Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Frame = +3
Query: 171 LVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGILTL 350
+ + NGSG KAGFAGDD P+ +FP+ VGR +H+ VM KD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 351 KYPIEHGIVTNWDDMXKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREXMTXIMFET 527
+ PIE GI+ NW DM +IW + + + +L PEEHP+LLTE PL N+E + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 528 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGXGVSTPCP 641
N PA+ ++Q VL+LYAS RTTGIVL+ G G++ P
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVP 169
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 161 bits (390), Expect = 2e-40
Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Frame = +3
Query: 171 LVVXNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGXKDSYVGDEAQSKRGIL 344
+V+ NG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLL 65
Query: 345 TLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIMFE 524
+KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANRE M MFE
Sbjct: 66 QVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFE 125
Query: 525 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGXGVSTPCP 641
+ +YVAIQAVLSLYA G ++G+V+DSG GV+ P
Sbjct: 126 RYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVP 164
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 120 bits (288), Expect = 3e-28
Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 32/196 (16%)
Frame = +3
Query: 150 ATXKLPRLVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGXK- 299
A+ +P +++ NG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 2 ASFNVP-IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKG 59
Query: 300 -------------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRV 437
D ++G++A K +L YPI HG + NWD M + W + + LR
Sbjct: 60 SGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRC 119
Query: 438 APEEHPVLLTEAPLNPKANREXMTXIMFETFNTPAMYVAIQAVLSLYASGRT-------- 593
PE+H LLTE PLNP NRE IMFE+FN +Y+A+QAVL+L AS +
Sbjct: 120 EPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179
Query: 594 TGIVLDSGXGVSTPCP 641
TG V+DSG GV+ P
Sbjct: 180 TGTVVDSGDGVTHIIP 195
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 87.8 bits (208), Expect = 2e-18
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Frame = +3
Query: 171 LVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGILTL 350
LV+ NGS +AG+ G+ P+ VF ++V R R + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 351 -KYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIMFET 527
+ P E +++NWD M ++ +TF +L + EHP+ +TE NP R MT ++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 528 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGXGVSTPCP 641
+N P++ I + S Y + + ++GIVL+ G S P
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIP 181
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.4 bits (207), Expect = 2e-18
Identities = 50/149 (33%), Positives = 76/149 (51%)
Frame = +3
Query: 171 LVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGILTL 350
+V+ GS + GF+G+D P+ V PS G + G + Y+ +S G + +
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEI 65
Query: 351 KYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTXIMFETF 530
K I +G V NWD +W + +L+ P EHP+L+TE NP NR MFE+
Sbjct: 66 KNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESL 125
Query: 531 NTPAMYVAIQAVLSLYASGRTTGIVLDSG 617
PA Y+A Q + +ASG+ T ++D G
Sbjct: 126 RCPATYLAKQETCAAFASGKGTACLVDIG 154
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 86.6 bits (205), Expect = 4e-18
Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Frame = +3
Query: 159 KLPRLVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRG 338
++P LV+ GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 9 EIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAP 62
Query: 339 I--LTLKYPIEHGIVTNWDDMXKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTX 512
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+ +
Sbjct: 63 IPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIME 122
Query: 513 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGXGVSTPCP 641
FE + PA Y+ QAV +A+ ++T +++D G ++ P
Sbjct: 123 AAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTP 165
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +3
Query: 357 PIEHGIVTNWDDMXKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREXMTXIMFE 524
PI+ G V +W+ + W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 525 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 617
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 216 GDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGILTLKYP 359
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 417 FYNELRVAPEEHPVLLTE--APLNPKANREXMTXIMFETFNTPAM---YVAIQ 560
+Y L E+HP+LLT+ A L P+ + + I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.9 bits (64), Expect = 0.48
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 4/160 (2%)
Frame = +3
Query: 171 LVVXNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGXKDSYVGDEAQSKRGILTL 350
+V+ NG+ KAGFAG P+ + R + + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKDGNRL--------FLGNELANCNDFTTL 57
Query: 351 KYPIEH--GIVTNWDDMXKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREXMTXIM 518
++ H G + +W +W N + P ++ +LLT+ + ++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 519 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGXGVSTPC 638
FE F A A L + G T D+ G C
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGEC 157
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 353 FEGQDTSFALCLISYIRVLXSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 174
F G +F CLI++IR + SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIREM-SHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 292 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 200
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 324 VPHLLHKSPXVPYRPSRPDGGAFPRSRGTR 235
+ L+ K+P PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,112
Number of Sequences: 5004
Number of extensions: 63262
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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