Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L09
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   2.5  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   3.3  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   4.4  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   7.6  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   7.6  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   7.6  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 503 VSEHHTRVSHDGPYASFAKCHLVPKGHFTPLTNH 402
           +S ++T  S   PY+S A  ++VP GH T + +H
Sbjct: 308 LSTNNTATSVPAPYSSAASVNVVP-GHATTILHH 340


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 250 EIPPPNSGRKSVWSFPSERAPQYFS 176
           E+PPP  G K     P+ER P+  S
Sbjct: 11  ELPPPEIGNKQKSKTPTERRPEGIS 35


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 93  VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLHTDF 224
           +P REE S + P  +  V      + PS+K  G +S  K++  F
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFF 148


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 655 GTSIRLCVMIIALSXPPLTTPRILIMQEPV 744
           GTS+++  +   +S  P TTP+I I + PV
Sbjct: 373 GTSLKVAPVSELISVIPPTTPQIYISRTPV 402


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 624 IQKYMKSASERYFDKAMRHDNRLIVXAADYSPNP 725
           IQK  K + E+ F  +  +    I  A+DY  NP
Sbjct: 686 IQKLKKPSREKSFTSSSEYSLPFISPASDYQQNP 719


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 588 NVDLHDDLGLESIQKYMKSASERYFDKAMRHDN--RLIVXAADYS 716
           N++LH D    ++  +++ A + Y+   + H N  R ++   D S
Sbjct: 288 NIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPS 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,494
Number of Sequences: 5004
Number of extensions: 75820
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)