Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L09
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0135 - 27913201-27913599                                         29   6.1  
02_03_0068 + 14711891-14712418                                         28   8.0  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   8.0  
01_06_1724 - 39452858-39454309                                         28   8.0  
01_06_1071 - 34289609-34292941                                         28   8.0  

>05_07_0135 - 27913201-27913599
          Length = 132

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 GGGISHPRLLSLAQSIPWARKVKYLGVTL 323
           GGG +  RL SL++S+ W R++    +TL
Sbjct: 64  GGGAASRRLASLSRSLRWKRRLPGFSLTL 92


>02_03_0068 + 14711891-14712418
          Length = 175

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 152 NGA*TSTQRKVLRCSFRGEAPHGFPPAIRRRNLTP 256
           NG+    + +  RC  RG A    PP  RRR L P
Sbjct: 90  NGSPPQEEAQRRRCGRRGGAASSSPPTPRRRGLLP 124


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 76  YSSRNKSLIAKKLQSAALALGQWFRKWR 159
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 302 QVPGRYPGCIDDIPPAYKISP*PCRVY 382
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>01_06_1071 - 34289609-34292941
          Length = 1110

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 179 KVLRCSFRGEAPHGFPPAIRRRNLTPPITLFSSIHTLG 292
           K+  C+F  E P G    I  R+L     L S IH +G
Sbjct: 619 KLSDCNFLREVPQGITRLINLRHLEASTRLLSRIHGIG 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,923,823
Number of Sequences: 37544
Number of extensions: 583827
Number of successful extensions: 1631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)