Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_L09
(837 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 108 8e-24
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 99 4e-21
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 99 4e-21
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 93 6e-19
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 92 7e-19
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 92 7e-19
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 91 2e-18
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 89 5e-18
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 89 5e-18
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 66 4e-11
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 66 4e-11
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 66 4e-11
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 66 6e-11
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 62 1e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 57 3e-08
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 57 3e-08
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 57 3e-08
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 57 3e-08
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 57 3e-08
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 56 6e-08
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 56 6e-08
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 43 6e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 32 1.1
AE014296-3472|AAS65085.1| 558|Drosophila melanogaster CG33486-P... 32 1.1
AE014134-2359|AAF53310.1| 417|Drosophila melanogaster CG16850-P... 30 4.5
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 29 7.9
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 108 bits (260), Expect = 8e-24
Identities = 52/137 (37%), Positives = 76/137 (55%)
Frame = +3
Query: 282 IPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTC 461
+P KYLGV LD +TF H+ +R R + + Y ++ RSK+SL NK+T+ K
Sbjct: 739 VPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQI 798
Query: 462 IRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMK 641
+ P Y ++ A +HI +Q++Q++ RL G WFVRN LH DL L ++ +
Sbjct: 799 LAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEIN 858
Query: 642 SASERYFDKAMRHDNRL 692
S RY D+ RH NRL
Sbjct: 859 KHSSRYHDRLERHRNRL 875
Score = 45.6 bits (103), Expect = 8e-05
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
LA FADD V Y SR + A +Q A +W R+W I IN +KS V F
Sbjct: 671 LATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCF 722
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 99 bits (238), Expect = 4e-21
Identities = 49/137 (35%), Positives = 80/137 (58%)
Frame = +3
Query: 282 IPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTC 461
IP A +V YLGV LD +T+R HI++ L+ +I RS +SL K L +
Sbjct: 730 IPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSV 789
Query: 462 IRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMK 641
++P+ TY S ++ +A+R++ID +Q QSR R+ GAPW++RN ++H DL ++ + + +
Sbjct: 790 LKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIA 849
Query: 642 SASERYFDKAMRHDNRL 692
+Y +K H N L
Sbjct: 850 EKKTKYNEKLTTHTNPL 866
Score = 32.3 bits (70), Expect = 0.85
Identities = 19/67 (28%), Positives = 25/67 (37%)
Frame = +1
Query: 16 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
D P + FADDT + S+ L ++ +W WRI IN K V
Sbjct: 653 DFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVT 712
Query: 196 FQRGSST 216
F T
Sbjct: 713 FTLNKQT 719
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 99 bits (238), Expect = 4e-21
Identities = 49/137 (35%), Positives = 80/137 (58%)
Frame = +3
Query: 282 IPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTC 461
IP A +V YLGV LD +T+R HI++ L+ +I RS +SL K L +
Sbjct: 730 IPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSV 789
Query: 462 IRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMK 641
++P+ TY S ++ +A+R++ID +Q QSR R+ GAPW++RN ++H DL ++ + + +
Sbjct: 790 LKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIA 849
Query: 642 SASERYFDKAMRHDNRL 692
+Y +K H N L
Sbjct: 850 EKKTKYNEKLTTHTNPL 866
Score = 32.3 bits (70), Expect = 0.85
Identities = 19/67 (28%), Positives = 25/67 (37%)
Frame = +1
Query: 16 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
D P + FADDT + S+ L ++ +W WRI IN K V
Sbjct: 653 DFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVT 712
Query: 196 FQRGSST 216
F T
Sbjct: 713 FTLNKQT 719
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 92.7 bits (220), Expect = 6e-19
Identities = 46/135 (34%), Positives = 79/135 (58%)
Frame = +3
Query: 255 PRLLSLAQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLR 434
P LL + +P A +V YLGV LD +T+R HI++ + + L+ +I S +SL
Sbjct: 723 PPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLD 782
Query: 435 NKVTLCKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG 614
+KV L + ++P+ TY S ++ +A+ ++ID +Q QS+ R GAPW+VR+ ++ DL
Sbjct: 783 HKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLN 842
Query: 615 LESIQKYMKSASERY 659
+ S+ + E+Y
Sbjct: 843 IPSVTNAITELKEKY 857
Score = 38.7 bits (86), Expect = 0.010
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 16 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
DIP + ++ FADDT + SR+ +L + + +W WRI +N K V
Sbjct: 655 DIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNEQKCKHVT 714
Query: 196 F 198
F
Sbjct: 715 F 715
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 92.3 bits (219), Expect = 7e-19
Identities = 41/125 (32%), Positives = 71/125 (56%)
Frame = +3
Query: 258 RLLSLAQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRN 437
+L L I W ++YLG+ D +TF+ HI + + I+ LYP+I ++SK+S+ N
Sbjct: 756 QLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISN 815
Query: 438 KVTLCKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGL 617
K+ + KT P++ Y S V+ A+THI LQ Q++ +L + P++ LH G+
Sbjct: 816 KIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGV 875
Query: 618 ESIQK 632
+ +Q+
Sbjct: 876 QKVQQ 880
Score = 53.2 bits (122), Expect = 4e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 13 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 192
+DIP++ L+LFADD VY + + S I + +QS L +++KW+I INP K+ A+
Sbjct: 682 HDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAI 741
Query: 193 LFQRGSSTR 219
F + R
Sbjct: 742 FFTKRRKPR 750
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 92.3 bits (219), Expect = 7e-19
Identities = 41/125 (32%), Positives = 71/125 (56%)
Frame = +3
Query: 258 RLLSLAQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRN 437
+L L I W ++YLG+ D +TF+ HI + + I+ LYP+I ++SK+S+ N
Sbjct: 704 QLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISN 763
Query: 438 KVTLCKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGL 617
K+ + KT P++ Y S V+ A+THI LQ Q++ +L + P++ LH G+
Sbjct: 764 KIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGV 823
Query: 618 ESIQK 632
+ +Q+
Sbjct: 824 QKVQQ 828
Score = 53.2 bits (122), Expect = 4e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 13 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 192
+DIP++ L+LFADD VY + + S I + +QS L +++KW+I INP K+ A+
Sbjct: 630 HDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAI 689
Query: 193 LFQRGSSTR 219
F + R
Sbjct: 690 FFTKRRKPR 698
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 91.1 bits (216), Expect = 2e-18
Identities = 43/132 (32%), Positives = 76/132 (57%)
Frame = +3
Query: 297 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVM 476
+ KYLG+TLD +TF PH+K+ R + +L ++ ++S M+LR K + C+ P+
Sbjct: 750 QAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIW 809
Query: 477 TYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASER 656
Y ++ AA+++ + +Q LQ+R R P++VR LH DL L ++++ + + R
Sbjct: 810 LYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSR 869
Query: 657 YFDKAMRHDNRL 692
Y D+ RH + L
Sbjct: 870 YSDRLRRHHSIL 881
Score = 38.7 bits (86), Expect = 0.010
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKS 183
LA +ADD + YSS + A+ LQ L W ++W + +NP K+
Sbjct: 675 LATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNPQKT 721
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/130 (31%), Positives = 77/130 (59%)
Frame = +3
Query: 303 KYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVMTY 482
KYLG+TLD +TF HI +++ + R+ +I R+K+SL KV + K+ + P + Y
Sbjct: 751 KYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFY 810
Query: 483 ASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYF 662
V+ AA++H++ ++ LQ++ R GAPW++R D+ DL + + +++ +++Y
Sbjct: 811 GLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYM 870
Query: 663 DKAMRHDNRL 692
++ H N L
Sbjct: 871 ERLNVHPNSL 880
Score = 35.1 bits (77), Expect = 0.12
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
+A +ADDT V S++ LQ A QW W + IN K V F
Sbjct: 676 IATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTF 727
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/130 (31%), Positives = 77/130 (59%)
Frame = +3
Query: 303 KYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVMTY 482
KYLG+TLD +TF HI +++ + R+ +I R+K+SL KV + K+ + P + Y
Sbjct: 553 KYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFY 612
Query: 483 ASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYF 662
V+ AA++H++ ++ LQ++ R GAPW++R D+ DL + + +++ +++Y
Sbjct: 613 GLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYL 672
Query: 663 DKAMRHDNRL 692
++ H N L
Sbjct: 673 ERLNVHPNSL 682
Score = 35.1 bits (77), Expect = 0.12
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
+A +ADDT V S++ LQ A QW W + IN K V F
Sbjct: 478 IATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTF 529
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 66.5 bits (155), Expect = 4e-11
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 297 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVM 476
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L K + P+
Sbjct: 807 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 866
Query: 477 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASE 653
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 867 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQ 926
Query: 654 RYFDKAMRHDNRLI--VXAADYSPN 722
RY + H+N LI + Y PN
Sbjct: 927 RYANSLTDHENPLIYDLLINAYKPN 951
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 22 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 722 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 781
Query: 196 F 198
F
Sbjct: 782 F 782
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 66.5 bits (155), Expect = 4e-11
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 297 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVM 476
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L K + P+
Sbjct: 807 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 866
Query: 477 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASE 653
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 867 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQ 926
Query: 654 RYFDKAMRHDNRLI--VXAADYSPN 722
RY + H+N LI + Y PN
Sbjct: 927 RYANSLTDHENPLIYDLLINAYKPN 951
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 22 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 722 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 781
Query: 196 F 198
F
Sbjct: 782 F 782
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 66.5 bits (155), Expect = 4e-11
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 297 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVM 476
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L K + P+
Sbjct: 807 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 866
Query: 477 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASE 653
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 867 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQ 926
Query: 654 RYFDKAMRHDNRLI--VXAADYSPN 722
RY + H+N LI + Y PN
Sbjct: 927 RYANSLTDHENPLIYDLLINAYKPN 951
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 22 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 722 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 781
Query: 196 F 198
F
Sbjct: 782 F 782
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 66.1 bits (154), Expect = 6e-11
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Frame = +3
Query: 297 KVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTCIRPVM 476
K +YLG+ LD +TF H+ ++ + +L +I K S + K+ L K + P+
Sbjct: 360 KQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIW 419
Query: 477 TYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASE 653
YA ++ + T +Q++++++ R + A + R D+ ++S + AS+
Sbjct: 420 HYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQ 479
Query: 654 RYFDKAMRHDNRLI--VXAADYSPN 722
RY + H+N LI + Y PN
Sbjct: 480 RYANSLTDHENPLIYDLLINAYKPN 504
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 22 PRSPPTH--LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 195
P PT+ LA +ADDT + S+ L Q+ +W +KW I IN K+ +L
Sbjct: 275 PDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHIL 334
Query: 196 F 198
F
Sbjct: 335 F 335
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 61.7 bits (143), Expect = 1e-09
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q+I K YLGVTLD+ +T H+ + + + +L ++ RSK+ + K+ + K
Sbjct: 801 QTIKKESKQSYLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTKILILK 860
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + RN + D G++++++
Sbjct: 861 SVLSPIWQYAIAAWGPLVTDAQIRRVQVEENRKIRDICRAGRYTRNQTIRDLFGVKTVEE 920
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + + Y PN
Sbjct: 921 FYQQAMHRFSETIKSHPNIAVRRILSRHYIPN 952
Score = 34.3 bits (75), Expect = 0.21
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 19 IPRSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTA 189
I R PT L+ +ADDT V S + + ++ W KW I +N AK+
Sbjct: 721 IYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGH 780
Query: 190 VLF 198
V+F
Sbjct: 781 VIF 783
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 57.2 bits (132), Expect = 3e-08
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q+I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 673 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 732
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + +N + D ++++++
Sbjct: 733 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEE 792
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + + Y PN
Sbjct: 793 FYQQAVHRFSETTKSHPNVAVRRIFSRHYIPN 824
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
L+ +ADDT V S + + ++ W KW I +N AK+ V++
Sbjct: 604 LSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIY 655
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.2 bits (132), Expect = 3e-08
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q+I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 848
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + +N + D ++++++
Sbjct: 849 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEE 908
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + + Y PN
Sbjct: 909 FYQQAVHRFSETTKSHPNVAVRRIFSRHYIPN 940
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
L+ +ADDT V S + + ++ W KW I +N AK+ V++
Sbjct: 720 LSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIY 771
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.2 bits (132), Expect = 3e-08
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q+I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 848
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + +N + D ++++++
Sbjct: 849 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEE 908
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + + Y PN
Sbjct: 909 FYQQAVHRFSETTKSHPNVAVRRIFSRHYIPN 940
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
L+ +ADDT V S + + ++ W KW I +N AK+ V++
Sbjct: 720 LSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIY 771
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 57.2 bits (132), Expect = 3e-08
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q+I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 751 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 810
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + +N + D ++++++
Sbjct: 811 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEE 870
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + + Y PN
Sbjct: 871 FYQQAVHRFSETTKSHPNVAVRRIFSRHYIPN 902
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
L+ +ADDT V S + + ++ W KW I +N AK+ V++
Sbjct: 682 LSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIY 733
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.2 bits (132), Expect = 3e-08
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q+I K YLGV LD+ +T PH+ V + ++ ++ +RSK+ K+ + K
Sbjct: 789 QAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLILK 848
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + +N + D ++++++
Sbjct: 849 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVEE 908
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + + Y PN
Sbjct: 909 FYQQAVHRFSETTKSHPNVAVRRIFSRHYIPN 940
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 43 LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 198
L+ +ADDT V S + + ++ W KW I +N AK+ V++
Sbjct: 720 LSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIY 771
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 56.0 bits (129), Expect = 6e-08
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q I K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ + K
Sbjct: 4 QVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILK 63
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + N + D G++++++
Sbjct: 64 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEE 123
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + Y PN
Sbjct: 124 FYQQALHRFSETIKSHPNIAVRRIFTRHYIPN 155
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 56.0 bits (129), Expect = 6e-08
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +3
Query: 276 QSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCK 455
Q I K YLGV LD+ +T H+ + + ++ ++ +RSK+ + K+ + K
Sbjct: 789 QVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILK 848
Query: 456 TCIRPVMTYASVVFAH-AARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQK 632
+ + P+ YA + I +Q ++R R A + N + D G++++++
Sbjct: 849 SVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEE 908
Query: 633 YMKSASERYFDKAMRHDNRLI--VXAADYSPN 722
+ + A R+ + H N + + Y PN
Sbjct: 909 FYQQALHRFSETIKSHPNIAVRRIFTRHYIPN 940
Score = 34.7 bits (76), Expect = 0.16
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 19 IPRSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTA 189
I R PT L+ +ADDT V S + + ++ + W KW I +N AK+
Sbjct: 709 IYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGH 768
Query: 190 VLF 198
V+F
Sbjct: 769 VIF 771
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 42.7 bits (96), Expect = 6e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 231 LLGGGISH-PRLLSLAQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMI 407
LL G + P + +++P+ R +YLG+T+ M F HI S+R R ++G L ++
Sbjct: 710 LLKGALRRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVL 769
Query: 408 CKRSKMSLRNKVTLCKTCIRPVMTYASVVFAHAA 509
S R + T+ + P + + + V+ A
Sbjct: 770 RADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTA 803
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/97 (20%), Positives = 44/97 (45%)
Frame = +3
Query: 282 IPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLCKTC 461
IP +K LG+TL+ + HI + + L + + + + + + K
Sbjct: 731 IPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKAT 790
Query: 462 IRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGA 572
I + Y ++ HA ++ ++ +++ + RLA+GA
Sbjct: 791 IIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGA 827
>AE014296-3472|AAS65085.1| 558|Drosophila melanogaster CG33486-PA
protein.
Length = 558
Score = 31.9 bits (69), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 452 QNLHKARHDLRECGVRSRGPHAHRHP 529
Q LH ++H LRE R G H HR P
Sbjct: 18 QILHGSKHSLRELAYRQSGKHRHRGP 43
>AE014134-2359|AAF53310.1| 417|Drosophila melanogaster CG16850-PA
protein.
Length = 417
Score = 29.9 bits (64), Expect = 4.5
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +3
Query: 141 VVPKMAHRHQPSEKYCG---ALSEGKLH---TDFLPLLGGGISHPRLLSLAQSIPWARKV 302
V PK+ HRH S G +S G+LH T LPL +SH ++A S V
Sbjct: 152 VSPKLVHRHSGSSSSAGFHPVISAGQLHKSATATLPL----VSHMEAEAMAVSPSAVAGV 207
Query: 303 KYLGVTLDASMTFRPHIKSVRDRAA 377
K +L+ + P + S AA
Sbjct: 208 KTTVTSLETATPTSPPLASTSAAAA 232
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 291 ARKVKYLGVTLDASMTFRPHIKSVRDRAAF---ILGRLYPMI 407
A +KYLGV +D ++F+ H + +AA L R+ P +
Sbjct: 714 AETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNV 755
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,157,276
Number of Sequences: 53049
Number of extensions: 934037
Number of successful extensions: 2555
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2554
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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