Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L08
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.50 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   1.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   4.7  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   6.1  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   6.1  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 210 VRVHRADTGRSSNELDRQTTXLERRGMGL-QHLAG 311
           +R H+   GR+  ELDR+ T L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 3   LDKN--VDDLYYSCYPFLLTCAIASAAECENATSLSLMIDSLLATY 134
           +DKN  ++  +YSC P+LL   I  A+ C+  +  S +ID  L T+
Sbjct: 91  VDKNTLLNYSFYSCNPYLLFKGIC-ASSCQIDSYQSSLIDDALETF 135


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 288 FPCVPXQSFVDPIHLKICQYPHGGL 214
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 115 TRSSQRTIGSLPPHSKIVVNLTLHLRHANI 204
           T S+Q  + S+  H+K+ +NLTL+L  +++
Sbjct: 463 TLSAQIAVQSVSSHAKLGMNLTLYLTFSSV 492


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 133 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 41
           Y    ES + D+ +  SH+ A +I Q  R+G
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSG 93


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 450 WSANVQALYAGDGAVXRYTGAESVVPGGGCS 358
           W A + A    DGAV  Y      V GGG S
Sbjct: 135 WQAGISACAVCDGAVPIYRNKPLAVVGGGDS 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,949
Number of Sequences: 5004
Number of extensions: 56962
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)