Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L08
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    29   4.9  
06_03_0395 - 20354713-20355570                                         29   4.9  
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733...    29   6.5  
05_03_0179 - 9257066-9258946                                           28   8.6  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.6  

>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/61 (36%), Positives = 25/61 (40%)
 Frame = +1

Query: 607 PVAGAXPXNAGXVXXPVGXXPECXSREXAXPAXPXGXPAAVXXRGXPLLSGPPXAXLXRP 786
           P +GA P  A     P G  P   S+    P    G PAAV  +  P   GPP A    P
Sbjct: 123 PPSGAPPAQAQRT--PFGGPPSAMSQ---GPLPFGGPPAAVASQPPPF-GGPPVAAAQPP 176

Query: 787 P 789
           P
Sbjct: 177 P 177


>06_03_0395 - 20354713-20355570
          Length = 285

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 424 CRRRSRYXIHGRGERSPRRWLQP--RLAVPRQASTSVPRTPA 305
           C+RR R   HGR  R  RR   P    A P  ++T  P T A
Sbjct: 56  CQRRHRLHSHGRHRRCHRREPPPPQTAAAPSPSTTKQPATAA 97


>05_03_0008 +
           7332224-7332700,7335136-7335153,7335747-7335848,
           7336927-7337202,7337474-7337674
          Length = 357

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 467 TIGPTTCRLARSXFGSRMHNS 529
           +I P+T   ARS FGS  HNS
Sbjct: 271 SISPSTASFARSPFGSLQHNS 291


>05_03_0179 - 9257066-9258946
          Length = 626

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 418 RRSRYXIHGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIP 284
           +++R   HGR        L+ + A P     +VP TP KC +P+P
Sbjct: 120 KKARGATHGRNIYDGGCLLEAQHAQPCSKDGAVP-TPTKCSTPVP 163


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 394 GRGERSPRRWLQPRLAVPRQASTSVPRTP 308
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,006,124
Number of Sequences: 37544
Number of extensions: 517017
Number of successful extensions: 1388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)