Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L07
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    28   1.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.5  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 519 PQASYPLW*LXWHLLXKTLYSKGSIGRA 436
           P   YP++   W LL  T Y K +IG+A
Sbjct: 3   PSIKYPIY--EWELLQDTYYQKSAIGKA 28


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -3

Query: 494  NFXGTSX*KLFIVKDR*AVLSQSLCVXNXWIKPAF 390
            N  G S  KLFIVKD   V+SQ L       +P F
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDLLPSMTSNQPVF 3525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,782
Number of Sequences: 5004
Number of extensions: 56109
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)