Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_L05
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 292 4e-80
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 292 5e-80
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 31 0.27
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 28 1.5
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.9
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 292 bits (717), Expect = 4e-80
Identities = 140/254 (55%), Positives = 178/254 (70%)
Frame = +2
Query: 50 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 409
K++K+EI+EAVTIIETPPMV VGVVGY+ TP GLR+L TVWAEH+SE+ +RRFYKNW+K
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 410 XXKAFTKAXXKWQDELGRKSIXKDFXXMIRYCSVVGVIAHTQMKLLKQRQXKAHIMEIQL 589
KAFTK K+ + +SI ++ + +YCSVV V+AHTQ++ Q KAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 590 NGGTIDDKVKWATXHLEKPIPXRFCVCPX*ND*LHWCHQGQRIQRCHFSLAHKEXTRXTH 769
NGG++ DKV+WA H EK + + + +G+ + K R TH
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243
Query: 770 XGLXKXACXGAXXP 811
GL K AC GA P
Sbjct: 244 RGLRKVACIGAWHP 257
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 292 bits (716), Expect = 5e-80
Identities = 139/254 (54%), Positives = 178/254 (70%)
Frame = +2
Query: 50 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 409
K++K+EI+EAVT+IETPPMV VGVVGY+ TP GLR+L TVWAEH+SE+ +RRFYKNW+K
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 410 XXKAFTKAXXKWQDELGRKSIXKDFXXMIRYCSVVGVIAHTQMKLLKQRQXKAHIMEIQL 589
KAFTK K+ + +SI ++ + +YCSVV V+AHTQ++ Q KAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 590 NGGTIDDKVKWATXHLEKPIPXRFCVCPX*ND*LHWCHQGQRIQRCHFSLAHKEXTRXTH 769
NGG++ DKV+WA H EK + + + +G+ + K R TH
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243
Query: 770 XGLXKXACXGAXXP 811
GL K AC GA P
Sbjct: 244 RGLRKVACIGAWHP 257
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 503 CSVVGVIAHTQMKLLKQRQXKAHIMEIQLNGGTIDDK 613
C+VVG + T M+ QRQ K I + LNG +D+K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 211 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVLKIF 44
F N VG G+I D S + +R+VF D +G L ++SH +P + V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 8 ILVXDCLPXCRTENFQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 184
IL + P C H + S +P + G K FP D+P S P+ + G
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343
Query: 185 AGMTHVVREPDRPGSKI 235
T ++ P++ +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 38 RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,353
Number of Sequences: 5004
Number of extensions: 57084
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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