Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_L04
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.2
08_01_0017 + 132109-132924 31 1.6
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 4.8
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 29 6.3
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 6.3
06_01_1041 - 8174344-8174574 28 8.3
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 461 PPPGTTLSAPVYLITAPSPA*SAWTLALQFLCS*TXGPTTCRLARSSSVLG 613
PPP TT++ V L P+ A S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESLPG 260
>08_01_0017 + 132109-132924
Length = 271
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 334 SAGIRTVDSDSRMLACLKCRVRLXTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIA 155
SAG DS C CR R + + D+ + RS+ + D D + + +A L +
Sbjct: 86 SAGFSFASRDSHSSTCSCCRSRTASDASASADAVTRALRSDRLFFDPDASPAAAADLKLN 145
Query: 154 QVRRN 140
+ + N
Sbjct: 146 KAKAN 150
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 320 HGGLGLTNVSMSQMQGQVXYDFGVGGRLPI 231
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 373 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPIS 552
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 553 M 555
+
Sbjct: 188 L 188
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 CAIASAAECENATSLSLM--IDSLL-ATYDRESPPDSKIVXNLTLHLRHANIRESESTVR 323
CA+ AEC+ +TS SL +D+L A YD + D L +R++ I + + +
Sbjct: 50 CAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLT 109
Query: 324 IPADL 338
P L
Sbjct: 110 YPFKL 114
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 492 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSXSVVCRSNS 343
T + S GGCS + PP AFRG+ + P V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>06_01_1041 - 8174344-8174574
Length = 76
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 400 WLVSSE-RLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKR 528
WL S E R WR +V AAA A LR R + G SC++R
Sbjct: 17 WLPSLEQRRWRRRLVREAAAAAVA----LRTRSGDGGDGSCVRR 56
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 8.3
Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Frame = -3
Query: 496 IHGRGERSPRRWLQPR--------LAVPRQASTSVPRTPAKCCSPIPPAFQXSRLSIQFI 341
IHG+G RRW P A+ + A SPI P F + +
Sbjct: 410 IHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISPI-PGFTGRGGAEASL 468
Query: 340 *RSAGIRTVDSDSRMLACLKCRVRLXTILESGGDSRSYVARSESIMRDSDVAFSHSAALA 161
RS DS LA + C SG S S+ + R + +A + AAL
Sbjct: 469 RRSLAAACASMDSSSLARILC--------SSGSSSSSHATLAARHFRPALLAAAEPAALV 520
Query: 160 IAQVR 146
+ VR
Sbjct: 521 VRAVR 525
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 490 GRGERSPRRWLQPRLAVPRQASTSVPRTP 404
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,045,508
Number of Sequences: 37544
Number of extensions: 498326
Number of successful extensions: 1416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -