Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_L01
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   2.0  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    28   2.0  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   3.5  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    27   4.6  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   6.1  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   8.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.1  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 289 PDNRTLTLKARVKAIRENWNLKYSATYVLCLLKDSGVKP 405
           PD        + K  + N NL+YS    +C + D  +KP
Sbjct: 506 PDTENQESSVKNKKAKSNVNLQYSPKTPICKINDETLKP 544


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 68  YRPGKVERKRGQRAASHYRQRTYPLMQ-FGNQSPVLXFGFTFIRLTWNVGR*PRCE*SQR 244
           Y  G  ++  GQ   +  ++  Y   +  G    ++ + F F+   W +     C  +  
Sbjct: 133 YYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTII 192

Query: 245 QKRAEPTPSSAAC 283
            K AE TP SA C
Sbjct: 193 LKTAELTPLSALC 205


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 382 ANTERTLHCILNSNFLL 332
           AN +  LHC+L  NFLL
Sbjct: 6   ANAKHKLHCLLKKNFLL 22


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 633 LVVHVKVTXPQQTIEF---EPXDKPFVPRVRIMERFHADVQ 520
           +VV+ ++  P+  I +        PF+PRV I E ++ D++
Sbjct: 408 IVVYQEIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIK 448


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 162 DWLPNCINGYVRW 124
           D+ PNC NGY+ W
Sbjct: 291 DFEPNCTNGYLTW 303


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 256 GADPVICRLWLPDNRTLTLKARVKAIRENWNL 351
           GADPV+   WL +  TL +K  ++    N N+
Sbjct: 388 GADPVLVDKWLENPETLEVKEVLEKRYANLNI 419


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 525  VQCFLNSSLWFCVENREQVSRRSIW*STCDD*YGS 421
            V CFL +S      N + +  R +W  + DD +GS
Sbjct: 2950 VSCFLQASSLLSSSNSKPLLTRVLWLLSVDDSHGS 2984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,032
Number of Sequences: 5004
Number of extensions: 66366
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)