Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_K23
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 58 2e-09
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 43 5e-05
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.12
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 5.9
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 7.8
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 7.8
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 7.8
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/122 (28%), Positives = 66/122 (54%)
Frame = +2
Query: 389 NIICFQELWNMPFAFCTRGKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILXRDXK 568
N+I F EL + C + + AE A +GP+ + LA KY + I+ ++ K
Sbjct: 39 NLILFPELITSGYE-CGN---TFTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94
Query: 569 HSDILWNTAVVISDTGNVIGKHRKNHIPESRRFNESNYYMEGNTGHPVFATRYRKIAVNX 748
S+I++N+ + I++ GN+ G +RK H+ ++ R ++ +G + P+F T + K+ V
Sbjct: 95 QSNIIYNSCIYITENGNLGGVYRKVHLFDTER----KHFKKG-SDFPIFETSFGKLGVMI 149
Query: 749 CF 754
C+
Sbjct: 150 CW 151
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 43.2 bits (97), Expect = 5e-05
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 6/190 (3%)
Frame = +2
Query: 269 KVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTRGK 448
++G++Q +A D+ N Q + K+++ A + G N+I E++N P+ G
Sbjct: 45 RIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPY-----GT 91
Query: 449 QPWCEFAESAEDG-PTTTFLRELAIKYAMVIVSSILXRDXKHSDILWNTAVVISDTGNVI 625
+ ++AE E+ P+ L +A + + + L+NTA+V +G +I
Sbjct: 92 GYFNQYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPE--RKDGKLYNTAMVFDPSGKLI 149
Query: 626 GKHRKNH-----IPESRRFNESNYYMEGNTGHPVFATRYRKIAVNXCFGRHHVLNWMMFG 790
HRK H IP F ES+ G+ + T Y K + C+ M+
Sbjct: 150 AVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVDTEYGKFGLGICYDIRFPELAMIAA 208
Query: 791 XNGPEIVFNP 820
NG ++ P
Sbjct: 209 RNGCSVMIYP 218
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -2
Query: 501 KVVVGPSSADSANSHHGCFPLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 322
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 321 LTGR 310
L GR
Sbjct: 290 LFGR 293
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -1
Query: 283 NYSYLHNXRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 173
++S N +R+G L +G ++VC GD + LSC G+
Sbjct: 885 DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 709 RMAGVTFHVVVGFVKSPTLGNVVLAMLPDHVSGVTNDNRSVPKY 578
R+ G FH G + L ++ + ML VS VT+ + P+Y
Sbjct: 269 RLQGYDFHANSGSSYTSRLKSLWMGMLTQAVSNVTSAHALFPQY 312
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 92 NNLTGRDLEEFNRIHFGRRNNLEI 163
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 590 TAVVISDTGNVIGKHRKNHIPESRRFNESNYYMEGN 697
T+V D GN G + ++ RRF++S+Y N
Sbjct: 281 TSVSNMDKGNPSGGSQSTNVTTFRRFSQSSYPRRSN 316
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 62 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 172
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,895
Number of Sequences: 5004
Number of extensions: 67117
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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