Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_K23
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 275 3e-74
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 70 3e-12
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 49 4e-06
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 48 7e-06
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 38 0.013
04_01_0376 - 4929447-4929731 29 4.7
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 6.2
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 28 8.2
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 275 bits (674), Expect = 3e-74
Identities = 141/262 (53%), Positives = 170/262 (64%), Gaps = 8/262 (3%)
Frame = +2
Query: 71 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 241
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 242 EQTRPPXIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 406
E R P +++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 407 ELWNMPFAFCTRGKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILXRDXKHSDILW 586
E W MPFAFCTR K+ WCEFAE DG +T FL++LA KY MVIVS IL RD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 587 NTAVVISDTGNVIGKHRKNHIPESRRFNESNYYMEGNTGHPVFATRYRKIAVNXCFGRHH 766
NTAVVI + GN+IG HRKNHIP FNES YYMEGNTGHPVF T Y KI VN C+GRHH
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHH 265
Query: 767 VLNWMMFGXNGPEIVFNPSPTI 832
LNW+ FG NG EIVFNPS T+
Sbjct: 266 PLNWLAFGLNGAEIVFNPSATV 287
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 69.7 bits (163), Expect = 3e-12
Identities = 43/157 (27%), Positives = 78/157 (49%)
Frame = +2
Query: 353 KKIIDVAGQEGVNIICFQELWNMPFAFCTRGKQPWCEFAESAEDGPTTTFLRELAIKYAM 532
+++I A ++G NI+ QEL+ + FC + + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 533 VIVSSILXRDXKHSDILWNTAVVISDTGNVIGKHRKNHIPESRRFNESNYYMEGNTGHPV 712
VI S + ++ +N+ +I G +G +RK+HIP+ + E Y+ G+TG
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKA 147
Query: 713 FATRYRKIAVNXCFGRHHVLNWMMFGXNGPEIVFNPS 823
F T+Y I V C+ + G EI+F P+
Sbjct: 148 FKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPT 184
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 49.2 bits (112), Expect = 4e-06
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = +2
Query: 317 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTRGKQPWCEFAESAEDG--- 487
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 488 -PTTTFLRELAIKYAMVIVSSILXRDXKHSDILWNTAVVISDTGNVIGKHRKNH-----I 649
P+ + + E+A + +V + + + L+NT V G + GKHRK H I
Sbjct: 110 APSFSMMSEVARSLQITLVGGSISE--RSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDI 167
Query: 650 PESRRFNESNYYMEGNTGHPVFATRYRKIAVNXCFGRHHVLNWMMFGXNGPEIVFNP 820
P F ES G V T +I + C+ M++ G ++ P
Sbjct: 168 PGKITFKESKTLTAGQ-DLTVVDTDVGRIGIGICYDIRFQELAMLYAARGAHLLCYP 223
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 48.4 bits (110), Expect = 7e-06
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Frame = +2
Query: 395 ICFQELWNMPFAFCTRGKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILXRDXK 568
+ FQE+WN P++ T E + G P+ + L E+A + + IV + +
Sbjct: 16 VLFQEIWNCPYSMETLPSH-----GEDIDGGASPSVSMLSEVAARRRITIVGGSIPE--R 68
Query: 569 HSDILWNTAVVISDTGNVIGKHRKNH-----IPESRRFNESNYYMEGNTGHPVFATRYRK 733
S L+NT VI G + KHRK H IP F ES+ + G + T +
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDVGR 127
Query: 734 IAVNXCFGRHHVLNWMMFGXNGPEIVFNPS 823
I + C M++ G ++ PS
Sbjct: 128 IGIGICHDIRFPELAMLYRSRGAHLICYPS 157
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 37.5 bits (83), Expect = 0.013
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Frame = +2
Query: 335 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TRGKQPWCEFAESAE 481
A +K +K++ A G I+ F E++ F +GK+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 482 D--GPTTTFLRELAIKYAMVIVSSILXRDXKHSDILWNTAVVISDTGNVIGKHRKNHIPE 655
D GP T L LA KY + +V ++ R L+NT + G +GKHRK
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERVGY---TLYNTVLFFDPLGKYLGKHRKVMPTG 163
Query: 656 SRRFNESNYYMEGNTGHPVFATRYRKIAVNXCF-GRHHVLNWMMFGXNGPEIVFNPS 823
R + +G+T PV+ T KI C+ R +L M+ G +I P+
Sbjct: 164 LERVFWG--FGDGST-IPVYDTPIGKIGAVICWENRMPLLRTAMYA-KGVQIYCAPT 216
>04_01_0376 - 4929447-4929731
Length = 94
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 737 RSCGIWSRIQDGRCYLPCSSW 675
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 486 PSSADSANSHHGCFPLVQNAKGIFHNSWKQMMLTPSW 376
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 341 FNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTRGKQPW 457
+ K+I D G V ++ +WN FC +GK PW
Sbjct: 214 YEDFKRIKDATGAASV-MVARGAMWNASI-FCPKGKTPW 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,813,000
Number of Sequences: 37544
Number of extensions: 475380
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -