Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_K23
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.38 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   2.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 632 HRKNHIPESRRFNESNYYMEGNTGHPVFATRYRKIAVNXCFGRHHVLNWMMFG 790
           H K    ++++ N  +     NT       R  K A+  CF   +VL+W  +G
Sbjct: 241 HEKALREQAKKMNVDSLRSNANTSSQSAEIRIAKAAITICF--LYVLSWTPYG 291


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 777 QFXTWCRP-KXMFTAILRYLVANTGWPVLPSM**LDSLNRRLSGMWF 640
           +F  W  P    +   L  LVA+  WP  PS   L  +NR++  + F
Sbjct: 259 RFINWHEPIPEAYFPKLDSLVASRTWPFRPSGTVLKDINRQVDELNF 305


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 420 IFHNSWKQMMLTPSWPATSMI 358
           I  NS +    +P WP+TS I
Sbjct: 576 IIRNSQQAPGQSPDWPSTSQI 596


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 153 LFRRPK*ILLNSSKSRPVKL 94
           LFR PK I +N+++ + +KL
Sbjct: 119 LFRGPKGIQINATELQKIKL 138


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 319 DWTIGGHRDGML 284
           +W +G H DG L
Sbjct: 518 EWKVGNHEDGYL 529


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 319 DWTIGGHRDGML 284
           +W +G H DG L
Sbjct: 433 EWKVGNHEDGYL 444


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 319 DWTIGGHRDGML 284
           +W +G H DG L
Sbjct: 752 EWKVGNHEDGYL 763


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,229
Number of Sequences: 438
Number of extensions: 5064
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)