Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_K16
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    45   7e-05
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    31   1.6  
05_03_0476 + 14499226-14499381,14499726-14499750,14500388-145007...    29   3.6  
11_01_0360 - 2742955-2743072,2743451-2743597,2743682-2743773,274...    28   8.3  
02_01_0002 - 9542-9762,11085-11196,11328-12575                         28   8.3  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +2

Query: 107 KLQGKILXIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAADLLFEKAYAQYRL 286
           K+  ++L  AP ++ A  CKVV  ++    ++ALA +  A+   L  DL + KAY  YR 
Sbjct: 43  KVADQVLAAAPGDEDAVRCKVVAHIKSDAIEKALAAIRAAER--LPIDLSYCKAYCYYRQ 100

Query: 287 NSPKEAL 307
           N  +EAL
Sbjct: 101 NKLQEAL 107



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 TPALKELRAQILYRLXQYQDCYNLYRDL 419
           T A+ +L +QI YRL +  DC N Y  L
Sbjct: 116 TSAILQLESQIYYRLGRMNDCMNSYEKL 143


>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 287 NSPKEALQTVDSAPAVDTCFKGIKGSNFIPLXXIPR-LLQF 406
           N P ++   VD  PAV+  F G   +N +P   I R LLQF
Sbjct: 563 NEPDKSANDVDMLPAVELQFHGTNHANPLPTRSIKRKLLQF 603


>05_03_0476 +
           14499226-14499381,14499726-14499750,14500388-14500734,
           14501608-14501886
          Length = 268

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 237 R*QQTCSLRRHTLNTVSTHLKKHYKLLIVPLQL-TPALKELRAQILYRLXQYQDCYNLYR 413
           R   TCSL     N++     +HY+ L V + L    LK +R Q+L RL +    Y++ +
Sbjct: 165 RDDSTCSLVLEPENSI-----RHYRRLHVSMVLYQDRLKRVR-QVLTRLRRRLYAYSITQ 218

Query: 414 DLLXNTTDEYEHER 455
           + L +   EYE +R
Sbjct: 219 ERLVDLDKEYEMKR 232


>11_01_0360 -
           2742955-2743072,2743451-2743597,2743682-2743773,
           2744408-2744507,2744590-2744790,2745254-2745459,
           2745619-2746045,2746172-2746411,2746514-2746719,
           2747081-2747176,2747348-2747521
          Length = 668

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 318 IVPLQLTPALKELRAQILYRLXQYQDCYNLYRD 416
           ++P ++ P + ++ AQ L +    Q CY +YRD
Sbjct: 209 LIPPRILPLMNDI-AQQLIQAGNQQSCYKIYRD 240


>02_01_0002 - 9542-9762,11085-11196,11328-12575
          Length = 526

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 EKAYAQYRLNSPKEALQTVDSAPAVDTCFKGI--KGSNFIPLXXI 388
           E+ Y +  L    E+L T D+ PAVD C   +     +++PL  I
Sbjct: 8   EEIYPRTLLEEDSESLSTGDTDPAVDLCSNKLCSVAQDYVPLEEI 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,303
Number of Sequences: 37544
Number of extensions: 285367
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)