Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_K08
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.4  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 301 CFLHNRISCLVVDLQFHQFHRNIQNI 224
           C L    +C+++   F   H +IQNI
Sbjct: 37  CVLQANRACILIKDLFDNVHNHIQNI 62


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 301 CFLHNRISCLVVDLQFHQFHRNIQNI 224
           C L    +C+++   F   H +IQNI
Sbjct: 20  CVLQANRACILIKDLFDNVHNHIQNI 45


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 204 YPSWPCWISFNFSKYKVSR 148
           +P  P W +F   KYK  R
Sbjct: 307 FPQRPIWSNFPIYKYKYIR 325


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 204 YPSWPCWISFNFSKYKVSR 148
           +P  P W +F   KYK  R
Sbjct: 307 FPQRPIWSNFPIYKYKYIR 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,998
Number of Sequences: 438
Number of extensions: 3113
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)