Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_K04
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   2.1  
07_03_1747 + 29188568-29188715,29188793-29189541                       30   2.8  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   4.9  
06_01_1041 - 8174344-8174574                                           28   8.5  
04_04_1553 - 34363848-34366058,34369087-34370451                       28   8.5  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.5  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   8.5  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   8.5  

>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 245 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 361
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 400 PPPGTTLSAPVYLITAPSPA*SAWTLALQFLCS*TIGPTTCRLARSSSV 546
           PPP TT++  V L   P+ A S   +  QF+C+     TTC  + S S+
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESL 258


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 347 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 183
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>06_01_1041 - 8174344-8174574
          Length = 76

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 339 WLVSSE-RLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKR 467
           WL S E R WR  +V   AAA  A    LR R  + G  SC++R
Sbjct: 17  WLPSLEQRRWRRRLVREAAAAAVA----LRTRSGDGGDGSCVRR 56


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 303 LSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRA-RVSNNGSVSCIKRLDIS 479
           + W   +  C +W   S  L R  VV L+ +  +    + R   V+  G + C++RLD+S
Sbjct: 521 VGWGPNDTSCCSWTGISCDLGR--VVELDLSNRSLSRNSFRGVAVAQLGRLPCLRRLDLS 578

Query: 480 T 482
           T
Sbjct: 579 T 579


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 429 GRGERSPRRWLQPRLAVPRQASTSVPRTP 343
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 374 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 207
           ++PP     H   + AP P +P+ S   P++  +   PH        S +QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 330 CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMQLDN 506
           CS++L    R+W     +++   +      LRA   +N S +    +D+STP +  LDN
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT--LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,161,735
Number of Sequences: 37544
Number of extensions: 494838
Number of successful extensions: 1414
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)