Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_K03
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     30   2.8  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     30   2.8  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   3.8  
07_01_0479 + 3606663-3607448                                           29   5.0  
06_03_1326 - 29355467-29355817                                         29   5.0  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   5.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.7  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   8.7  

>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = -1

Query: 882 GGXXXXXXXXGPXAGGGXXGXXPXAXXQRHXGXAXGGEXGSXRXAGXXGXRSXGKXNXGP 703
           GG        GP  GGG  G  P    + + G   GG  G     G  G  S G    G 
Sbjct: 37  GGGVGGRGGRGPPGGGGGRGYEP-GGGRGYGGGGGGGGRGYGGGGGGGGYESGGGRGYGG 95

Query: 702 APTG 691
              G
Sbjct: 96  GGRG 99


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = -1

Query: 852 GPXAGGGXXGXXPXAXXQRHXGXAXGGEXGSXRXA-GXXGXRSXGKXNXGPAPTGG 688
           G  AGGG  G    A   R    A GG  G+   A G  G    G       P GG
Sbjct: 267 GAGAGGGHGGAGAGAGGARGGAGAGGGHGGAGAGAGGGRGGAGAGAGGGAQEPGGG 322


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTELERXGMGLQHLAGVLGTL 357
           V+ H  +  R S EL+RQ  ELER G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/69 (26%), Positives = 21/69 (30%)
 Frame = +2

Query: 677 PXWXPPVGAGPXLXFPXERXPXXPACRXDPXSPPXAXPXWRXXXALGXXPXXPPPAXGPX 856
           P   PP    P +  P +R P  P        PP   P  R    +G     P    GP 
Sbjct: 171 PGQMPPPMRPPQMPIPFQRPPGVPPA-FPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPP 229

Query: 857 XXXXXXXPP 883
                  PP
Sbjct: 230 PGMRPGMPP 238


>06_03_1326 - 29355467-29355817
          Length = 116

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = -1

Query: 852 GPXAGGGXXGXXPXAXXQRHXGXAXGGEXGSXRXAGXXGXRSXGKXNXGPAPTGGXHXG 676
           G   GGG  G           G   GGE GS +  G       G    G   +GG H G
Sbjct: 22  GKGGGGGSGGGGRSGGGGGGGGGKGGGEGGSGKYGGGYSGGHAG-GGGGAGKSGGYHGG 79


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 343 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 179
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 370 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 203
           ++PP     H   + AP P +P+ S   P++  +   PH        S +QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,889,981
Number of Sequences: 37544
Number of extensions: 460780
Number of successful extensions: 1343
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)