Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_K02
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 35 0.079
01_05_0490 + 22672241-22674679 33 0.42
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 31 1.3
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 31 1.3
03_02_0111 + 5688649-5688942 31 1.7
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 30 2.2
07_01_0122 - 926971-927378 29 5.2
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 29 5.2
03_01_0515 - 3864796-3865425 29 5.2
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 5.2
04_01_0530 - 6928528-6929500,6929514-6930964 28 9.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 9.0
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 35.1 bits (77), Expect = 0.079
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 782 SPPRXPLPPXPXXPXXXPPGYXXSXX*XXWPXXXXXEPAXPRPAPP 919
SPP P PP P P PP Y + + P+ PRP PP
Sbjct: 75 SPPPPPPPPPPPPPVPVPPAYSVTSSVPPYSMTSSLPPS-PRPPPP 119
>01_05_0490 + 22672241-22674679
Length = 812
Score = 32.7 bits (71), Expect = 0.42
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 785 PPRXPLPPXPXXPXXXPPGY-XXSXX*XXWPXXXXXEPAXPRPAPP 919
PP P PP P P PP Y + +P P P P PP
Sbjct: 658 PPSRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLPPPPPPP 703
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 31.1 bits (67), Expect = 1.3
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 62 CAIASAAECENATSLSLM--IDSLL-ATYDRDSPPDSKIVVNLTLHLRHANIRESESTAA 232
CA+ AEC+ +TS SL +D+L A YD D D L +R++ I + +
Sbjct: 50 CAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLT 109
Query: 233 NTGRSSNELDRQTTXLERRASGAAALG 313
+ S ++ L+ A+ A G
Sbjct: 110 YPFKLSQKIKEVRKKLDEIAANRAQFG 136
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Frame = +2
Query: 773 AXXSPPRXPL-----PPXPXXPXXXP-PGYXXSXX*XXWPXXXXXEPAXPRPAPP 919
A SPP+ P PP P P P PGY S EP P PAPP
Sbjct: 26 AQLSPPQPPDDQYDDPPMPGLPVSPPSPGYSDSPEPPLPDSPPSQEPDTPEPAPP 80
>03_02_0111 + 5688649-5688942
Length = 97
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 272 TXLERRASGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPX*SAWT 445
T L A+ AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 188 HLRHANIRESESTAANTGRSSNELDRQTTXLERRASGAAALGWCPRNACGGLTW 349
H R +R++ TAA RS+ LD A+ A+ALG C R C + W
Sbjct: 956 HARRGRVRDALGTAARMHRSAAGLD--------EATYASALGACARGRCLRMGW 1001
>07_01_0122 - 926971-927378
Length = 135
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -1
Query: 235 IRSGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEGQ*CCVFAFCRTSYSTSE 56
+R GG G + +S +QG+ ++ G GV + C + H G C F R + S
Sbjct: 28 LRDGGGGCRSGRVSDLQGRRPHELG-AEGVDLAYCAVEMMHAGASCYDFDRFRVIFRPSP 86
Query: 55 EKXVTRII 32
+ II
Sbjct: 87 RQSDCMII 94
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +2
Query: 773 AXXSPPRXPLPPXPXXPXXXPPGYXXSXX*XXWPXXXXXEPAXPRPAP 916
A +PP P PP P P PP P +PA P P P
Sbjct: 458 AAPAPPSPPEPPSPRDP-ASPPSLRSPPRQPTPPPSPSLQPAFPAPQP 504
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 782 SPPRXPLPPXPXXPXXXPP 838
SPP PLPP P P PP
Sbjct: 82 SPPPPPLPPPPPPPAASPP 100
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 283 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSXIKRLDISTPIS 462
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 463 MQLDN 477
LDN
Sbjct: 188 --LDN 190
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 49 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 189
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 400 GRGERSPRRWLQPRLAVPRQASTSVPRTP 314
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,615,753
Number of Sequences: 37544
Number of extensions: 475476
Number of successful extensions: 1651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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