Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_K02
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 36 0.031
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 36 0.031
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 36 0.041
Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical pr... 36 0.054
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 34 0.12
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 34 0.12
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 34 0.12
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z70270-2|CAA94228.1| 445|Caenorhabditis elegans Hypothetical pr... 33 0.22
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 33 0.29
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 33 0.29
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 33 0.29
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 33 0.29
AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.29
AL132862-1|CAB60529.2| 434|Caenorhabditis elegans Hypothetical ... 33 0.38
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 32 0.66
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 32 0.66
AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical ... 32 0.66
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 31 1.2
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 31 1.2
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 31 1.5
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 31 1.5
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 31 1.5
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC006618-5|ABB88234.1| 513|Caenorhabditis elegans Gaba/glycine ... 30 2.0
AC006618-4|ABB88233.1| 546|Caenorhabditis elegans Gaba/glycine ... 30 2.0
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 30 2.7
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 30 2.7
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 30 2.7
AL132902-7|CAB81993.1| 485|Caenorhabditis elegans Hypothetical ... 29 3.5
AF040661-8|AAG24222.1| 327|Caenorhabditis elegans Hypothetical ... 29 3.5
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 6.2
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 29 6.2
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 29 6.2
AF016670-1|AAB66108.2| 512|Caenorhabditis elegans Hypothetical ... 29 6.2
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 28 8.1
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 28 8.1
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 28 8.1
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 28 8.1
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 36.3 bits (80), Expect = 0.031
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 310 WL-VSSERLWRPDVVLLNAA-ATTAGDYALR-ARVSNNGSVSXIKRLDISTPISMQLDNW 480
W+ +S+ R W PDV+ N D ++ A + NG + + +S+P +++DN+
Sbjct: 100 WIKISASRAWIPDVIFTNGIDMDPLLDKDMQMADLRYNGEIRTSRPAVVSSPCPLEIDNF 159
Query: 481 PNDMXTCTFQV 513
P D+ C +
Sbjct: 160 PYDVQKCNISM 170
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 36.3 bits (80), Expect = 0.031
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 292 EWGCSTWLVSSERLWRPDVVLLNAAATT-AGDYALRARVSN-NGSVSXIKRLDISTPISM 465
+WG S ++W P++V +N +T+ G + +N G + +TP
Sbjct: 126 QWGLSWLNFYWIQIWTPNIVQINGGSTSNPGQVTSKVLAANYTGQIYLWSDFSFTTPFRF 185
Query: 466 QLDNWPNDM 492
Q +++PNDM
Sbjct: 186 QYEDYPNDM 194
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 35.9 bits (79), Expect = 0.041
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 322 SERLWRPDVVLLNAAATTAGDYA---LRARVSNNGSVSXIKRLDISTPISMQLDNWPNDM 492
SERLW P+V +N+ +T + + NG+V R+ +S P S +L +P D
Sbjct: 112 SERLWTPNVCFVNSKSTQVHKSPASNILLIIYPNGTVWLNYRVQVSAPCSFELSRFPIDA 171
Query: 493 XTC 501
C
Sbjct: 172 QEC 174
>Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical
protein ZC482.1 protein.
Length = 550
Score = 35.5 bits (78), Expect = 0.054
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 322 SERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSXIKRLDISTPISMQLDNWPNDM 492
S+ +W PD L N + + R R++ +G V+ RL + SM L N+P D
Sbjct: 132 SQNIWVPDTFLANDKHSYLHEVTERNKMLRINVDGKVAYGMRLTSTLSCSMNLRNFPLDS 191
Query: 493 XTCTFQVRF*GCT 531
CT ++ G T
Sbjct: 192 QNCTVEIESYGYT 204
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRLDISTPISMQLDNWPND 489
V SE +W+PD+++ N A + ++ ++ + G +S + + +Q++ +P D
Sbjct: 101 VPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFPYD 160
Query: 490 MXTC 501
C
Sbjct: 161 QQIC 164
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRLDISTPISMQLDNWPND 489
V SE +W+PD+++ N A + ++ ++ + G +S + + +Q++ +P D
Sbjct: 101 VPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFPYD 160
Query: 490 MXTC 501
C
Sbjct: 161 QQIC 164
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRLDISTPISMQLDNWPND 489
V SE +W+PD+++ N A + ++ ++ + G +S + + +Q++ +P D
Sbjct: 85 VPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFPYD 144
Query: 490 MXTC 501
C
Sbjct: 145 QQIC 148
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 319 SSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMX 495
+S +LWRPDV+L N+ + + Y+ R VS+NG V + + +P D
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDVQQNPPGIFRFVCQIDVTYYPFDKQ 162
Query: 496 TC 501
TC
Sbjct: 163 TC 164
>Z70270-2|CAA94228.1| 445|Caenorhabditis elegans Hypothetical
protein C53D6.3 protein.
Length = 445
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAATTAGDYALRA---RVSNNGSVSXIKRLDISTPISMQLDNWPNDMX 495
+RLW P+ +N+ + R+ + NG+V R+ + P S+ L N+P D+
Sbjct: 130 DRLWTPNSCFINSKVAQIHNSPFRSVFLMLFPNGTVMVNYRVRVKGPCSLDLSNFPLDLQ 189
Query: 496 TCT 504
C+
Sbjct: 190 KCS 192
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
++W P+ ++N+ TT + + + NG+V RL + +P ++ L +P D T
Sbjct: 113 KIWSPNTCMINSKRTTVHASPSENVMVILYENGTVWINHRLSVKSPCNLDLRQFPFDTQT 172
Query: 499 C 501
C
Sbjct: 173 C 173
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
++W P+ ++N+ TT + + + NG+V RL + +P ++ L +P D T
Sbjct: 113 KIWSPNTCMINSKRTTVHASPSENVMVILYENGTVWINHRLSVKSPCNLDLRQFPFDTQT 172
Query: 499 C 501
C
Sbjct: 173 C 173
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
++W P+ ++N+ TT + + + NG+V RL + +P ++ L +P D T
Sbjct: 113 KIWSPNTCMINSKRTTVHASPSENVMVILYENGTVWINHRLSVKSPCNLDLRQFPFDTQT 172
Query: 499 C 501
C
Sbjct: 173 C 173
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
++W P+ ++N+ TT + + + NG+V RL + +P ++ L +P D T
Sbjct: 113 KIWSPNTCMINSKRTTVHASPSENVMVILYENGTVWINHRLSVKSPCNLDLRQFPFDTQT 172
Query: 499 C 501
C
Sbjct: 173 C 173
>AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical
protein Y58G8A.1 protein.
Length = 486
Score = 33.1 bits (72), Expect = 0.29
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 304 STWLVSSERLWRPDVVLLNAAATTAGDY---ALRARVSNNGSVSXIKRLDISTPISMQLD 474
ST ++S +LW+P + L N+A + L A V N G V
Sbjct: 98 STLSIASSKLWQPALQLYNSARGNSWSLYLTGLPAIVYNTGKVWSRGTFSFFVTCQFDFT 157
Query: 475 NWPNDMXTC 501
NWP D +C
Sbjct: 158 NWPYDQQSC 166
>AL132862-1|CAB60529.2| 434|Caenorhabditis elegans Hypothetical
protein Y73F8A.2 protein.
Length = 434
Score = 32.7 bits (71), Expect = 0.38
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATTAGDYA---LRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
+LW P+V ++N+ +T D + + NG++ R+ P M L N+P D
Sbjct: 135 KLWSPNVCIVNSKSTKVHDSPKPNILLMIFPNGTIWLNYRIRSEAPCQMNLRNFPLDSIR 194
Query: 499 CT 504
C+
Sbjct: 195 CS 196
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTA--GDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPND 489
V + ++W+PDV++ N A + A V N G V + + ++ L +P D
Sbjct: 106 VPAHKIWKPDVLVYNNANMNVEENEMETNAIVDNTGRVMLFRSMITDISCNLNLQQFPFD 165
Query: 490 MXTC 501
C
Sbjct: 166 QQIC 169
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTA--GDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPND 489
V + ++W+PDV++ N A + A V N G V + + ++ L +P D
Sbjct: 106 VPAHKIWKPDVLVYNNANMNVEENEMETNAIVDNTGRVMLFRSMITDISCNLNLQQFPFD 165
Query: 490 MXTC 501
C
Sbjct: 166 QQIC 169
>AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical
protein Y48B6A.4 protein.
Length = 474
Score = 31.9 bits (69), Expect = 0.66
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 292 EWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSXIKRLDISTPISM 465
E+G T L + LW+PD++L N+A + + VS+NG V +S S+
Sbjct: 92 EYGNITTLQIPHGTLWKPDILLFNSANEHFDASFPVHMVVSSNGDVLFAPPGIVSFSCSL 151
Query: 466 QLDNWPNDMXTC 501
+ +P D C
Sbjct: 152 SMTWFPYDQQVC 163
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDM 492
V S+R+W PD+VL NA + V ++G V+ + + + ++ +P D
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVPPAMFKSSCRIDVEWFPFDE 196
Query: 493 XTCT 504
CT
Sbjct: 197 QCCT 200
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDM 492
V S+R+W PD+VL NA + V ++G V+ + + + ++ +P D
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVPPAMFKSSCRIDVEWFPFDE 196
Query: 493 XTCT 504
CT
Sbjct: 197 QCCT 200
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 292 EW-GCSTWLVSSERLWRPDVVLLNAAATT--AGDYALRARVSNNGSVSXIKRLDISTPIS 462
EW G ++ ++W PD + N T ++ R R V K +D++ P+S
Sbjct: 103 EWNGIERIIIPKSQIWIPDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVDLTCPMS 162
Query: 463 MQLDNWPNDMXTCTFQ 510
+ ++P D+ C Q
Sbjct: 163 VL--SFPFDVQLCALQ 176
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSXIKRLDISTPISMQLDNWPNDMX 495
+++W PD ++N+ +++ + NG V RL++ TP S+ L +P D
Sbjct: 95 KKIWTPDTCIINSKSSSIHSSPSENTFVILYENGLVWSNFRLNVKTPCSVNLKMFPFDSL 154
Query: 496 TC 501
+C
Sbjct: 155 SC 156
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 292 EW-GCSTWLVSSERLWRPDVVLLNAAATT--AGDYALRARVSNNGSVSXIKRLDISTPIS 462
EW G ++ ++W PD + N T ++ R R V K +D++ P+S
Sbjct: 103 EWNGIERIIIPKSQIWIPDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVDLTCPMS 162
Query: 463 MQLDNWPNDMXTCTFQ 510
+ ++P D+ C Q
Sbjct: 163 VL--SFPFDVQLCALQ 176
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 758 GGLLLAXXSPPRXPLPPXPXXPXXXPP 838
G LL PPR P PP P P PP
Sbjct: 24 GTSLLEAIRPPRPPRPPSPSRPQRPPP 50
>AC006618-5|ABB88234.1| 513|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 2, isoform b protein.
Length = 513
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATTAGDYA---LRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
++W+PDV NA + + +GS+ R+ + ++ L+ WP D
Sbjct: 110 KMWKPDVYFANARIAEFHEVTQPNFLVWIQPDGSILYDTRISMVVVCTLNLEKWPLDSQR 169
Query: 499 CTFQV 513
C ++
Sbjct: 170 CHLRI 174
>AC006618-4|ABB88233.1| 546|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 2, isoform a protein.
Length = 546
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATTAGDYA---LRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXT 498
++W+PDV NA + + +GS+ R+ + ++ L+ WP D
Sbjct: 110 KMWKPDVYFANARIAEFHEVTQPNFLVWIQPDGSILYDTRISMVVVCTLNLEKWPLDSQR 169
Query: 499 CTFQV 513
C ++
Sbjct: 170 CHLRI 174
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 298 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSXIKRLDISTPISM 465
G V S+ +W PDVVL N A G+Y + +A+++ NG+V + +
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEWAPPAIYKSMCQI 153
Query: 466 QLDNWPNDMXTC 501
++ +P D C
Sbjct: 154 DVEFFPFDRQQC 165
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMX 495
E+LW P+V +N+ T ++ + + NG+V RL + +P + L +P D+
Sbjct: 113 EKLWTPNVCFVNSKKTEIHSSPTPNIFLMIYPNGTVWVNYRLQVQSPCMVDLVLFPMDIM 172
Query: 496 TC 501
C
Sbjct: 173 NC 174
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 298 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSXIKRLDISTPISM 465
G V S+ +W PDVVL N A G+Y + +A+++ NG+V + +
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEWAPPAIYKSMCQI 153
Query: 466 QLDNWPNDMXTC 501
++ +P D C
Sbjct: 154 DVEFFPFDRQQC 165
>AL132902-7|CAB81993.1| 485|Caenorhabditis elegans Hypothetical
protein Y71A12B.8 protein.
Length = 485
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 167 IVVNLTLHLRHANIRESESTAANTGRSSNEL-DRQTTXLERRASG 298
IV N + HL+H I E + AA GRS +L +R++ R G
Sbjct: 43 IVRNRSSHLKHTIIVEKDRKAAIPGRSGTDLRERKSNRSNRELKG 87
>AF040661-8|AAG24222.1| 327|Caenorhabditis elegans Hypothetical
protein W10G11.16 protein.
Length = 327
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAATTAGDYA---LRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMX 495
E++WRPD NA + R+ +G V R+ I ++ L +P+D
Sbjct: 35 EKIWRPDPFFANAKEAEFHEVTFLNFLMRIFPDGLVLYETRVKIKPSCNLILCKYPHDKQ 94
Query: 496 TCTFQVR 516
TC ++
Sbjct: 95 TCDLLIK 101
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 319 SSERLWRPDVVLLNAAA 369
SS+ +W+PDV+L N+AA
Sbjct: 105 SSDHIWKPDVLLYNSAA 121
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 RLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXTC 501
++WRPD++L N+A+ + V N G V+ I M + +P D C
Sbjct: 48 QIWRPDILLYNSASEDFDSSFKSNEVVYNTGEVNWIPPGIFRASCKMDITYFPFDDQVC 106
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 310 WL-VSSERLWRPDVVLLNAAATTA--GDYALRARVSNNGSVSXIKRLDISTPISMQLDNW 480
W+ +S R+W PDV+ + + + A + NG + +ST + + ++
Sbjct: 100 WIKISVSRVWVPDVIFTKRLSVESLLDEDMQMADLRYNGEIRTSLPAVVSTSCPLNIQDF 159
Query: 481 PNDMXTCTFQV 513
P+D+ C +
Sbjct: 160 PHDVQECNISM 170
>AF016670-1|AAB66108.2| 512|Caenorhabditis elegans Hypothetical
protein K02F6.7 protein.
Length = 512
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 252 FEDLPVFAAVDSDSRMLACLKCRVRLTTILESGGESRSYVARSESIMRDS 103
F+DL V ++ D LA +KC+ R T + +S ++R ++RDS
Sbjct: 249 FQDLQVLVYLEEDHFYLAHVKCKTRKTGLTDS---YFFQISRGTELVRDS 295
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 331 LWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXTCTF 507
+W+PDV+L N+ + + A V G+V+ I I + ++ + +P D CT
Sbjct: 106 IWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWIPPAIIRSSCAIDIAYFPFDTQHCTM 165
Query: 508 Q 510
+
Sbjct: 166 K 166
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 307 TWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRLDISTPISMQLDNW 480
TW + +++W PD+++ N A A+R AR+ NG++ + + + ++
Sbjct: 137 TW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTIVASHPAVHTVSCEINIRHF 195
Query: 481 PNDMXTCTFQV 513
P D C ++
Sbjct: 196 PLDDQRCAIEI 206
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 331 LWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSXIKRLDISTPISMQLDNWPNDMXTCTF 507
+W+PDV+L N+ + + A V G+V+ I I + ++ + +P D CT
Sbjct: 106 IWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWIPPAIIRSSCAIDIAYFPFDTQHCTM 165
Query: 508 Q 510
+
Sbjct: 166 K 166
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 307 TWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRLDISTPISMQLDNW 480
TW + +++W PD+++ N A A+R AR+ NG++ + + + ++
Sbjct: 137 TW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTIVASHPAVHTVSCEINIRHF 195
Query: 481 PNDMXTCTFQV 513
P D C ++
Sbjct: 196 PLDDQRCAIEI 206
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 307 TWLVSSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSXIKRLDISTPISMQLDNW 480
TW + +++W PD+++ N A A+R AR+ NG++ + + + ++
Sbjct: 137 TW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTIVASHPAVHTVSCEINIRHF 195
Query: 481 PNDMXTCTFQV 513
P D C ++
Sbjct: 196 PLDDQRCAIEI 206
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 403 VSNNGSVSXIKRLDISTPISMQLDNWPNDMXTCTF 507
+S++G V R+ ++ P ++PND CTF
Sbjct: 146 ISSSGMVRTSARMMLTIPCRTGFGSYPNDYKNCTF 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,302,358
Number of Sequences: 27780
Number of extensions: 346692
Number of successful extensions: 1108
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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