Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_K01
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.12 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   3.5  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   6.1  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   8.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   8.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
 Frame = +2

Query: 14  PISSRGNAFPAPXTSQPES-ARLRPLPXYYSVCI-STIYPGLRRPIWRSSPMTPPSTTRA 187
           P S+   + P P TS   +     PLP   + C  ST  P         +P  PP++T +
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 312

Query: 188 GRRRCFIDDFRP*LPPWDSGSGSGASTLTPRKAQRCSSK--------GVALRTPR*ASLS 343
                      P  P   S +G+ +S L P  +  C++              TP     S
Sbjct: 313 TST--------PPPPASTSSTGTSSSPL-PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363

Query: 344 RLGASTPPPPPFAQSRCTTS 403
               STPPPP    S  T+S
Sbjct: 364 TSSTSTPPPPASTSSTGTSS 383



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
 Frame = +2

Query: 14  PISSRGNAFPAPXTSQPES-ARLRPLPXYYSVCI-STIYP-----GLRRPIWRSSPMTPP 172
           P S+   + P P TS   +     PLP   + C  ST  P      L  PI   +P  PP
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPI---TPTVPP 253

Query: 173 STTRAGRRRCFIDDFRP*LPPWDSGSGSGASTLTPRKAQRCSSK--------GVALRTPR 328
           ++T +             +PP  + S    S+  P  +  C++              TP 
Sbjct: 254 TSTSSTSIP---------IPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPT 304

Query: 329 *ASLSRLGASTPPPPPFAQSRCTTS 403
               S    STPPPP    S  T+S
Sbjct: 305 VPPTSTSSTSTPPPPASTSSTGTSS 329


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +1

Query: 4    WIRSDIESR---ERVP-GPXHVTAGVR--KAPPSPRLLFSLYINDIPR 129
            W+  D+++    +RVP G   ++  +R    PP P L + +Y+ND  R
Sbjct: 1030 WVYGDLDNDTIIDRVPPGSSRISNFIRFLDPPPKPYLSYKMYLNDFTR 1077


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 416 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 526
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
 Frame = +2

Query: 152 SSPMTPPSTTRAGRRRCFIDDFRP*LPPWDS---------GSGSGASTLTPRKAQRCSSK 304
           S P  PP ++R        +  RP  PP  S         G+GS  S+L P      S+ 
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347

Query: 305 GVALRTPR*ASLSRLGASTPPPPPFAQSRCT---TSPYRGPRR-SNI*ASPSTVG*HSAP 472
             ++  P        G S PPPPP   +  T     P    R  SN  A P  +   SAP
Sbjct: 348 AGSIPLPP------QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 429 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 334
           F+L    Y L    +W  GG  GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 477 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 373
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 35  AFPAPXTSQPESARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRAGRRRCFID 211
           + P P + +  ++    L   +    S+ +   R+P  RS P+TP    TRA     ++ 
Sbjct: 75  SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133

Query: 212 DFRP*LPPWDSGSGS 256
           DF P   P++    S
Sbjct: 134 DFTPPSSPFEDMQAS 148


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 313 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 444
           PP  + + P PT   NTPA      T+    IP  P V  +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 249 EPLSHGGSYGLKSSMKQRLLPARVVDGGVIGE 154
           E L+HGGS+ + + + Q LL  R+    +I E
Sbjct: 372 EDLNHGGSHKINNCIGQILLAKRLGKNRIIAE 403


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 247 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 342
           F+ W+    P+ S  +L ++G PP + LS  L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,520,585
Number of Sequences: 5004
Number of extensions: 78445
Number of successful extensions: 235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)