Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J23
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 53 4e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.049
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 31 0.15
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.26
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.34
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 30 0.45
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.79
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 28 1.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.4
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.8
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 28 1.8
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 1.8
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.8
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.6
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.6
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.8
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 9.8
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.8
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 53.2 bits (122), Expect = 4e-08
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 630 GHPLCEFCEKRFMDPDELYRHLRKEHLYCHLCD 728
GHP CEFC F D DEL++H R++H C++CD
Sbjct: 243 GHPKCEFCNTHFYDDDELFKHCREKHERCYICD 275
Score = 51.2 bits (117), Expect = 2e-07
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 9/157 (5%)
Frame = +2
Query: 374 IVFCSEXIKNAYENLLENRCK--ICDKIPPFRNFSLLNDHMXRVHERFFCDLCVNHLXIX 547
IV+ E + LL+ C CD + + L H H +FFCDLCV + +
Sbjct: 154 IVYSDEHAQEESNLLLQFNCPEDACDIT--CKGWFDLKLHAKVKHHKFFCDLCVKNKKVF 211
Query: 548 TNERRCYTRQELAHHRRKG----DLDDTSHRGPSTL*IL*ETIHGS**VVPSLA---QGA 706
T+E ++++ L H G DL+ T +G + + +
Sbjct: 212 THEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFKHCREKHERC 271
Query: 707 LVLSFV*CRWKXFYYASHSALAQHFRKDHYLCEXGEC 817
+ V R Y+ ++ +L +HF KDHY+C EC
Sbjct: 272 YICDQVAGRPTHQYFKNYDSLERHFEKDHYICREREC 308
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 127 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFT 300
E +E C +C + + Y + C+H +C C+ R+R L EC C+ + V+ T
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLIT 130
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.049
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 76 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN 255
Y A E ++ ++ E + E C +CF + + C H C C M+ L
Sbjct: 145 YETAVAEF-LHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPC--LMQALTQSP 201
Query: 256 ECPICR 273
+CP CR
Sbjct: 202 QCPTCR 207
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 621 HTGGHPL-CEF--CEKRFMDPDELYRHLRKEHLYCHLCDADGXNSIMLH 758
HTG P C + C+KRF DEL RH+R HL L + + LH
Sbjct: 26 HTGEKPFECSYPSCKKRFTRRDELIRHVR-THLRKALVTPEQTLDVNLH 73
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 127 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 222
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 195 LAN*VVQNVLETNYASILVRLSLRHDCCI 109
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 621 HTGGHP-LCEF--CEKRFMDPDELYRHLR 698
HTG P +C F C KRF DEL RH R
Sbjct: 48 HTGEKPHVCTFPGCAKRFSRSDELTRHAR 76
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 118 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFEC-STRMRVLCLQNECPICRK 276
+ S + + CV+C + S C H C C + + +CP+CR+
Sbjct: 195 VPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 28.3 bits (60), Expect = 1.4
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +1
Query: 85 AFTES*INNTTIMSEAQANENTCVVCFKN---VLYYSIGEC-DHPVCFECSTRMRVLCLQ 252
A+ E IN + A+ E V N +L+ S+GE D + F CS+ +R+L +
Sbjct: 334 AYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLLFHCSSDVRILQVV 393
Query: 253 NECPICRKDLL-----RVVFTDSIHPYKEL 327
NE + + V++ D HP K L
Sbjct: 394 NESMPIKSEFFILTTESVLWMDIQHPQKPL 423
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 151 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 282
C +C + + C H C+EC + L CP CR+ L
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYEC--LLNWLKESKSCPTCRQKL 126
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 642 CEFCEKRFMDPDELYRHLRKEHL 710
C FC + F D L RH+++ HL
Sbjct: 58 CSFCNRAFARSDVLNRHVQQMHL 80
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 354 CLKDNTKLYSVLXT*KMHMKTCWRIGV 434
C DN K+Y+V K H +C GV
Sbjct: 27 CYDDNAKIYAVKFVNKKHATSCMNAGV 53
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 112 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 237
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +1
Query: 40 ASTYSEFNKTLGYRNAFTES*INNTTIMSEA--QANENTCVVCFKNVLYYSIGECDHPVC 213
A+ F++ G+R NN + ++TC +C + +C+ VC
Sbjct: 45 AAVKEAFSENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQC-----HKCESNVC 99
Query: 214 FECSTRMRVLCLQNECPIC 270
CS + R + CP C
Sbjct: 100 SMCSKQERTFESEAFCPSC 118
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 142 ENTCVVCFKNVLYYS----IGECDHPVCFECSTRMRVLCLQNECPICR 273
+ C+VC N + +C+H EC + + QN CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW-LTSSQNSCPLCR 568
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 193 ECDHPVCFECSTRMRVLCLQNECPICR 273
+C H C+ C L CPIC+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 639 LCEFCEKRFMDPDELYRHLRKEH 707
+C C K+F + L RH+R H
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLH 446
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 616 YLTQGAIHFVNSVRNDSWILMSCTVTCARSTCTVICV-MPMEXILLCFT 759
Y G H S+RNDS +S + + + + + + L CFT
Sbjct: 144 YTHSGMTHITPSIRNDSTKFLSLLINACKDRLSSSAISLQWKKTLECFT 192
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 279 IFTTYRTLILKTEHPHPSRALETYGM 202
+F YR L+ PH +RAL+ +G+
Sbjct: 57 LFPKYREKYLREVWPHVTRALDKFGI 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,152
Number of Sequences: 5004
Number of extensions: 69088
Number of successful extensions: 220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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