Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J22
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    35   0.12 
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    35   0.12 
BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...    31   1.5  
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...    31   1.5  
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...    31   1.5  
DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...    31   2.6  

>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 741 CTELRIFRTLFPMFTFYNLPVSLKCFSNRFHYFFLSLNPSLFG 613
           CT   +   +  M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 356 CTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 741 CTELRIFRTLFPMFTFYNLPVSLKCFSNRFHYFFLSLNPSLFG 613
           CT   +   +  M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 356 CTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 707 GXRVRKIRNSVHFPXTQDV*TS*AP*YPXKSLPXK 811
           G R RKIR +VHF     +    +P YP KS+P +
Sbjct: 147 GTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTR 181


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 707 GXRVRKIRNSVHFPXTQDV*TS*AP*YPXKSLPXK 811
           G R RKIR +VHF     +    +P YP KS+P +
Sbjct: 147 GTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTR 181


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 707 GXRVRKIRNSVHFPXTQDV*TS*AP*YPXKSLPXK 811
           G R RKIR +VHF     +    +P YP KS+P +
Sbjct: 155 GTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTR 189


>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 707 GXRVRKIRNSVHFPXTQDV*TS*AP*YPXKSLPXK 811
           G R RKIR +VHF     +    +P YP KS+P +
Sbjct: 155 GTRARKIRANVHFRRPTTLKLPRSPKYPRKSVPTR 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,802
Number of Sequences: 53049
Number of extensions: 238000
Number of successful extensions: 793
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)