Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J19
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 31 0.28
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 30 0.37
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.84
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.84
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.6
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 3.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.4
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 27 3.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.5
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 4.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.9
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 30.7 bits (66), Expect = 0.28
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 577 PPSPGDLXYINPIIKSPD-SIHQPPQ 651
PP PGD+ + NP++ PD + QP +
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSE 243
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 255 PSVCGGACGSGWLDRTTLSELCKGCIPWNAQTGYQFDGGL 136
PS CGG C + + +E CKG P NA + D G+
Sbjct: 490 PSCCGGHCCK---EESCRTENCKGAYPANATVTVEEDSGM 526
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 276 GDRPREDPSVCGGACGSGWLDRTTLSELCKGC 181
GD PR VCG GSG LD +E+C C
Sbjct: 186 GD-PRIPGRVCGNCKGSGQLDFIFFTEICPVC 216
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.84
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 321 TGTETKSNSVTV-QSLPNVS--SIIKXYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 491
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 492 DVTVEGVNVLATPSSS 539
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/109 (22%), Positives = 40/109 (36%)
Frame = +3
Query: 321 TGTETKSNSVTVQSLPNVSSIIKXYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 500
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 501 VEGVNVLATPSSSRITIGGLALMHQATLPWRSXLHQPDHQIPRFHTPTT 647
V +TP ++ ++ + +T P S + P TP T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 587
Score = 26.2 bits (55), Expect = 6.0
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +2
Query: 569 ASSHPPLAISATSTRSSNPPIPYTNHPRT*HXFPSIP*TPYYKXLXXXX*SLRLSSKGSI 748
++S PP S +ST +S+ P+P T+ T SIP P ++ +S S
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCT--TSTSIP--PTGNSTTPVTPTVPPTSTSST 367
Query: 749 SVXXPPRXLGMAKXVSPPLFS 811
S PP S PL S
Sbjct: 368 STPPPPASTSSTGTSSSPLLS 388
Score = 26.2 bits (55), Expect = 6.0
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Frame = +3
Query: 333 TKSNSVTVQSLPNVSSIIKX--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 506
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 507 GVNVLATPSSSRITIGGLALMHQATLPWRSXLHQPDHQIPRFHTPTT 647
V +TP ++ ++ + +T P S + P TP T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 528
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 568 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 449
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 545 YYWRSRPYASSHPPLAISATSTRSSNPPIPYTNHP 649
YY RS P + S P +++ + S+N P Y+N P
Sbjct: 129 YYHRS-PSSDSFSPGVVASVNPNSNNSPTFYSNPP 162
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 384 IKXYRDAYLVNLEAVVFPSAPSLKIPVTVD 473
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 586 PGDLXYINPIIKSPD-SIHQPPQNLTXISINPLN 684
PGD + P+I S D S+HQP +T + I+P++
Sbjct: 113 PGD--ELRPLIVSIDFSVHQPIFGITFVGIDPVD 144
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 607 NPIIKSPDSIHQPPQNLTXISINPLNPVLQXTSXPGLKPP 726
N + SP + PP+ + +S +NP + TS P L PP
Sbjct: 261 NGTVSSPPN--SPPRPIAPVS---MNPAINSTSKPPLPPP 295
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +3
Query: 189 CIALTALFCLANRFRRLHRTRSDL---PWD 269
C + ++C+ + F RLH +L PWD
Sbjct: 98 CKGIYEIYCIGDSFTRLHEKMKELNPAPWD 127
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 322 VRSKYRXLKRDDQTLRRPSQGRSERVRWSLR 230
+RS LK+DD ++ P +G SE+ LR
Sbjct: 14 IRSFQNLLKQDDSKVKEPRKGFSEKSGQKLR 44
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 553 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 419
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 182 QPLHSSDSVVLSSQPLPQAPPHT 250
QP H S VLSS P PP T
Sbjct: 16 QPNHGMGSKVLSSDPNASLPPQT 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,122
Number of Sequences: 5004
Number of extensions: 68598
Number of successful extensions: 247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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