Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J19
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945           29   3.6  
03_02_0759 + 10959028-10959135,10959238-10959807                       29   3.6  
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42...    29   4.7  
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608           29   6.3  
01_05_0227 - 19512866-19514983                                         29   6.3  
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    28   8.3  

>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
          Length = 493

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 560 RPYASSHPPLAISATSTRSSNPPIP 634
           RP+ S  PPL  +AT+TR  + P P
Sbjct: 33  RPHPSPPPPLLATATATRRDDEPAP 57


>03_02_0759 + 10959028-10959135,10959238-10959807
          Length = 225

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 326 ASKIEVQXVEKG*SNVEETVPGKI-RACAVEPAEAVG*TEQRCQS-YAKVASHGTRRRVI 153
           A+ + +  +  G + VE   P  I  AC+  P  AV    +RC+    K A  G +RRV+
Sbjct: 152 AAHMPIAAIRPGSTAVERVSPPSILSACSPAPPGAVV-IRKRCKKGQGKAAMRGRKRRVV 210

Query: 152 SLMAV 138
            L+ +
Sbjct: 211 QLLTL 215


>02_01_0057 +
           420812-421556,422473-422597,422622-422912,423357-423555,
           423737-423800,423894-423957,424055-424135,424334-424420,
           424492-424500
          Length = 554

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 188 LHSSDSVVLSSQPLPQAPPHTLGSSLGRSPQRLIIPFQRPVLRS 319
           L  +DSV LSS  L  +PP    S   R  +R ++P   PV+ S
Sbjct: 245 LMRADSVSLSSSSLSVSPPRRHRSPASRLRRRRLLPRPLPVVAS 288


>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
          Length = 325

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 255 PSVCGGACGSGWLDRTTLSE 196
           P VC    G GWLDR T SE
Sbjct: 303 PCVCDVGIGLGWLDRPTSSE 322


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 505 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 413
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 453 KIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ 575
           K+ V +D    TAD+++  +N+L  P        G  L+HQ
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQ 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,138,176
Number of Sequences: 37544
Number of extensions: 557875
Number of successful extensions: 1748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)