Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J19
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.51 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.51 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   4.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   4.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   4.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 203 SVVLSSQPLPQAPPHTLGSSLGRSPQRLIIPFQRPVLRS 319
           S ++   PLP  P HT    L  S +  I   + PVLRS
Sbjct: 433 SCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRS 471


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 203 SVVLSSQPLPQAPPHTLGSSLGRSPQRLIIPFQRPVLRS 319
           S ++   PLP  P HT    L  S +  I   + PVLRS
Sbjct: 433 SCLIHGPPLPPLPLHTECEDLSVSGEAGIEEVKSPVLRS 471


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 202 QRCSV*PTASAGSTAHARIFPGTVSSTFDHPFST 303
           Q+CS+    S  ST+  + FP   +    H F+T
Sbjct: 401 QKCSIESITSVNSTSSPKPFPRRATLAQLHNFTT 434


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 639 PTTPELNXHFHQS-PEPR 689
           PTTPE N H + S P+ R
Sbjct: 81  PTTPEYNNHLYGSTPDSR 98


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 212 EQRCQSYAKVASHGTRRRVISLMAVWKKRKH*PRREWPKRQETSK 78
           E+ C    K+    T R+  S     ++  +   RE+ K +ETSK
Sbjct: 20  EKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 212 EQRCQSYAKVASHGTRRRVISLMAVWKKRKH*PRREWPKRQETSK 78
           E+ C    K+    T R+  S     ++  +   RE+ K +ETSK
Sbjct: 20  EKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 212 EQRCQSYAKVASHGTRRRVISLMAVWKKRKH*PRREWPKRQETSK 78
           E+ C    K+    T R+  S     ++  +   RE+ K +ETSK
Sbjct: 20  EKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 212 EQRCQSYAKVASHGTRRRVISLMAVWKKRKH*PRREWPKRQETSK 78
           E+ C    K+    T R+  S     ++  +   RE+ K +ETSK
Sbjct: 20  EKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSK 64


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 194 SSDSVVLSSQPLPQAPPHTLG 256
           S+DS+   ++ LP  PP  LG
Sbjct: 2   SNDSIHWEARYLPAGPPRLLG 22


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 266 PGKIRACAVEPAEA 225
           PG I+AC   PA A
Sbjct: 24  PGTIQACTTSPATA 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,506
Number of Sequences: 438
Number of extensions: 4993
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)