Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J14
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   248   6e-67
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  248 bits (608), Expect = 6e-67
 Identities = 109/150 (72%), Positives = 133/150 (88%)
 Frame = +3

Query: 165 KEDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 344
           +++ KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 345 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPXRXGYWGNK 524
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P R GYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 525 IGKPHTVPCKVTXKCGSVTVRLIPAPRGTG 614
           +G PHTVP KV+ KCGSVTVRL+PAPRG G
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAG 176



 Score = 32.3 bits (70), Expect = 0.091
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 613 GIVSAPVPXKLLXMAGVQDCY 675
           G+V+APV  + L +AG++DCY
Sbjct: 176 GLVAAPVTKRFLQLAGIEDCY 196


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 554 GHRQVWFCNSPADSCPSWYWELCLRQFLXSFFXWLVYRTATPXLVVQL 697
           G+ + WF +  A +   WY E        S F WL+  TATP L+V L
Sbjct: 49  GYPEEWFPSVSA-TIGDWYPE-------RSVFQWLIALTATPRLLVLL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,999
Number of Sequences: 5004
Number of extensions: 55936
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)