Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J14
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      252   3e-67
07_01_0756 + 5819367-5820038,5820847-5821005                          249   3e-66
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     66   5e-11
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    46   5e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613...    30   2.7  
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   4.8  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  252 bits (617), Expect = 3e-67
 Identities = 112/150 (74%), Positives = 134/150 (89%)
 Frame = +3

Query: 165 KEDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 344
           +++ ++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96

Query: 345 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPXRXGYWGNK 524
           KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+P R GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 525 IGKPHTVPCKVTXKCGSVTVRLIPAPRGTG 614
           IG+PHTVPCKVT KCGSVTVR++PAPRG+G
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSG 186


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  249 bits (609), Expect = 3e-66
 Identities = 112/150 (74%), Positives = 133/150 (88%)
 Frame = +3

Query: 165 KEDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 344
           +++ ++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99

Query: 345 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPXRXGYWGNK 524
           KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+P R GYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159

Query: 525 IGKPHTVPCKVTXKCGSVTVRLIPAPRGTG 614
           IGKPHTVPCKVT KCGSVTVR++PAPRG+G
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 189


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +3

Query: 384 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPXRXGYWGNKIG-KPHTVPCKVT 560
           FV +GD + HI LGVKC+K  AT + GAIILA   +     G     I  KPHTV CKV 
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56

Query: 561 XKCGSVTVRLIPAPRGT 611
            K GSVTVR++  P G+
Sbjct: 57  DKYGSVTVRMMLPPMGS 73


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/52 (38%), Positives = 33/52 (63%)
 Frame = +3

Query: 312 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 467
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222


>07_03_0681 +
           20659789-20659839,20660030-20660170,20661294-20661399,
           20661625-20661806,20661888-20662113,20662198-20662624,
           20662844-20663189,20663271-20663849
          Length = 685

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 557 DLARDGVWLSDLVTPVTXSXW*NRQLSKDNSASNGSGDFLAALHTQTNMT 408
           DL  D   ++ +   +  + W NR +++    + G G    ALH  TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 446 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 330
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,502
Number of Sequences: 37544
Number of extensions: 420225
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)