Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J14
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.3  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 224 KNRQTREHLLVFFT 265
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 224 KNRQTREHLLVFFT 265
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 224 KNRQTREHLLVFFT 265
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 224 KNRQTREHLLVFFT 265
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 645 KLXRNWRRHNSQYHEGQESAGLLQNHTXR*PCK 547
           KL + W   N  + E  E  G +++H     CK
Sbjct: 104 KLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 406 TVILVWV*SAARKSPL 453
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,972
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)