Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J10
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    29   0.83 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   0.83 
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.4  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   5.8  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 119 SKATKTRPQNRRSARTSLSDNAFPRFLLVITPP 217
           S ++  RPQ +RS+   LS +AF +F+   +PP
Sbjct: 133 SHSSIVRPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 595 TGTETKSNSVTV-QSLPNVS--SIIKXYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 765
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 766 DVTXEGVNVLXTPSSS 813
           DV+ E    L TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 658 IKXYRDAYLVNLEAVVFPSAPSLKIPVTVD 747
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 328 DLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTD 429
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 125 PWNIHGKRNQKARSGKSLDLLARESRKRRRE 33
           PW +  K   K R GK+++ L    R R +E
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKE 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,479
Number of Sequences: 5004
Number of extensions: 62482
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)