Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J07
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 35 0.071
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 35 0.071
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 35 0.071
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 35 0.071
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 35 0.071
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 35 0.071
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 34 0.16
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 34 0.16
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.22
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.29
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 32 0.66
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 32 0.66
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 32 0.66
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 32 0.66
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 31 1.5
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 31 1.5
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 31 1.5
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 31 1.5
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 31 1.5
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 31 1.5
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 30 2.0
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 29 3.5
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 29 3.5
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 29 4.7
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 6.2
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 28 8.1
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 28 8.1
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 28 8.1
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 290
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 291 RVG 299
G
Sbjct: 130 LFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 290
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 291 RVG 299
G
Sbjct: 130 LFG 132
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 290
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 291 RVG 299
G
Sbjct: 130 LFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 290
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 291 RVG 299
G
Sbjct: 130 LFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 290
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 291 RVG 299
G
Sbjct: 130 LFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLXWNAG 290
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 291 RVG 299
G
Sbjct: 130 LFG 132
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 33.9 bits (74), Expect = 0.16
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 171 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWN 284
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 33.9 bits (74), Expect = 0.16
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 171 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWN 284
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 114 MIDSLLATYDRDSPP--DSK--IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLX 278
+I+ L++ Y R+ P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 279 W 281
W
Sbjct: 85 W 85
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 138 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNA 287
YD D+P + L +L+ + E E V + +L W D RL WNA
Sbjct: 65 YDPDAPQRYNYTLFL-YNLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNA 113
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRES 218
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
+ + L+ WID++L W+ G
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRES 218
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
+ + L+ WID++L W+ G
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRES 218
LL I+ E + D L+ Y+R + P+ + + L L L ++ E
Sbjct: 10 LLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEI 69
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
+ + L+ WID++L W+ G
Sbjct: 70 DQIMTCSVWLKQTWIDRKLSWDPVNYG 96
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 138 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNA 287
YD ++P + L +L+ ++E + + + ++ W D RL WNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +3
Query: 45 YPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NI 209
+ F L + + E + T + D L+ YD P + +++N++++ +
Sbjct: 8 FVFYLAISWCNLLEVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTL 67
Query: 210 RESESTVRIQADLQMNWIDKRLXWN 284
+E T+ ++ + W D+ L WN
Sbjct: 68 DPAEETINFSSEFILQWKDEFLFWN 92
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 218
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 218
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 69 IASAAECENATSLSLMIDSLLATYDRD-SPPDSKIVVNLTLH-LRHANIRESESTVRIQA 242
+ + A E + + +L+ TYD D P D +V +T + ++ +++ T++
Sbjct: 17 LTAVAFLETSNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSMDQTQETIQYSE 76
Query: 243 DLQMNWIDKRLXWNAGRVGLQH 308
+ + W D L WN V ++
Sbjct: 77 EFLLRWYDPILHWNQSAVSYEN 98
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 218
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRES 218
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 90 ENATSLS-LMIDSLLATYDRDSPPDSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWI 263
E+A L+ L I +A+ + + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 264 DKRLXWN 284
D RL WN
Sbjct: 93 DDRLMWN 99
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 180 LTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNA 287
L +L+ ++E E V + +L W D RL WN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNA---GRVGLQHLAG 317
++ E + + ++ L +W+D RL WN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +3
Query: 51 FLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHL-RHANIRE 215
FLL I +S ++++LL Y++ P + V +L R ++ E
Sbjct: 11 FLLVIFILHIVTINANKHVSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDE 70
Query: 216 SESTVRIQADLQMNWIDKRLXWN 284
+ L+M W DK+L WN
Sbjct: 71 VNQVLTTSLWLEMQWYDKKLTWN 93
>Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical
protein C11H1.4b protein.
Length = 270
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 323 EDTSQVLQPHSPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 144
E+ V + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 82 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 141
Query: 143 IVRCEERVD 117
I+ C R+D
Sbjct: 142 ILGCTSRID 150
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical protein
C11H1.4a protein.
Length = 996
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 323 EDTSQVLQPHSPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 144
E+ V + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 867
Query: 143 IVRCEERVD 117
I+ C R+D
Sbjct: 868 ILGCTSRID 876
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 323 EDTSQVLQPHSPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 144
E+ V + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 867
Query: 143 IVRCEERVD 117
I+ C R+D
Sbjct: 868 ILGCTSRID 876
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 174 VNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLXWNAGRVGLQHL 311
VN+ L + H + E E T + + WID+ + W+A + + L
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDAKKENVTKL 100
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 138 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNA 287
YD D+P + L L+ + E V + ++ W D RL WNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 153 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGRV-GLQHL 311
PP +++ + + + L+ ++ E E V D W D+RL WN G+ H+
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHI 103
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 319 SSERXWRPDVXLLNAAATT-AGDYALRXRVSNNG 417
+S + WRPDV L N+ + + Y+ R VS+NG
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNG 136
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 192 LRHANIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
+R ++ E + L+M W D RL W+ GR G
Sbjct: 59 IRIIDVDEVNQVLTTNLWLEMQWFDYRLMWDPGRWG 94
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 186 LHLRHAN-IRESESTVRIQADLQMNWIDKRLXWN 284
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRES 218
L T A A+ T + L+ D LL YD+ + P D+ +N++ + + + E
Sbjct: 10 LATTASLCIADTPVPTQIRLVHD-LLDNYDKKAKPMWDNSKPINVSFSMDLYQILELNEP 68
Query: 219 ESTVRIQADLQMNWIDKRLXWN 284
+ + + A + W D+ L WN
Sbjct: 69 QQYILLNAWIIERWFDEFLYWN 90
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRES 218
L T A A+ T + L+ D LL YD+ + P D+ +N++ + + + E
Sbjct: 10 LATTASLCIADTPVPTQIRLVHD-LLDNYDKKAKPMWDNSKPINVSFSMDLYQILELNEP 68
Query: 219 ESTVRIQADLQMNWIDKRLXWN 284
+ + + A + W D+ L WN
Sbjct: 69 QQYILLNAWIIERWFDEFLYWN 90
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRES 218
+L+ I + C+ + + + + LL Y+ P + V + L L+ ++ E
Sbjct: 9 ILSLVIIHSNLCDGSVAETKLFTDLLKGYNPLERPVQNSSQPLEVKIKLFLQQILDVDEK 68
Query: 219 ESTVRIQADLQMNWIDKRLXWNAGRVG 299
V + A L W D +L W + G
Sbjct: 69 NQIVSVNAWLSYTWFDHKLQWEPKKYG 95
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 54 LLTCAIASAAECENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHL---RHANIRES 218
L T A A+ T + L+ D LL YD+ + P D+ +N++ + + + E
Sbjct: 10 LATTASLCIADTPVPTQIRLVHD-LLDNYDKKAKPMWDNSKPINVSFSMDLYQILELNEP 68
Query: 219 ESTVRIQADLQMNWIDKRLXWN 284
+ + + A + W D+ L WN
Sbjct: 69 QQYILLNAWIIERWFDEFLYWN 90
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/79 (18%), Positives = 32/79 (40%)
Frame = +3
Query: 75 SAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQM 254
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 255 NWIDKRLXWNAGRVGLQHL 311
+W D + W+ + GL L
Sbjct: 114 SWNDTMVSWDKEQWGLSWL 132
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 153 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLXWNAGRV-GLQHL 311
PP +I + L++ ++ + E E D + +W D RL W+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,711
Number of Sequences: 27780
Number of extensions: 248439
Number of successful extensions: 654
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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