Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J07
(919 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 7e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.002
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.14
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.32
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.55
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.55
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.55
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.55
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.55
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.55
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.55
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.55
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 5.1
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 9.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.5 bits (78), Expect = 7e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 87 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 251
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 252 MNWIDKRLXWNA 287
+ W L W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 93 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 260
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 261 IDKRLXWNAGR 293
+D+RL + G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.14
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 114 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 272
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 273 LXWN 284
L +N
Sbjct: 95 LRFN 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.6 bits (56), Expect = 0.32
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA-ATTAGDYALRXRVSNNG 417
+ R W+PDV + N+A G Y V NNG
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNG 134
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 9.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
++ + W+PD+ + N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 9.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
++ + W+PD+ + N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 9.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
++ + W+PD+ + N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 9.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
++ + W+PD+ + N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 9.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
++ + W+PD+ + N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.2
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA-ATTAGDYALRXRVSNNG 417
++ + W+PD+ + N+A G Y V++NG
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNG 97
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.2 bits (50), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA-ATTAGDYALRXRVSNNG 417
++ + W+PD+ + N+A G Y V++NG
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.2 bits (50), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA-ATTAGDYALRXRVSNNG 417
++ + W+PD+ + N+A G Y V++NG
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
V S+ WRPD+ L N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
V S+ WRPD+ L N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
V S+ WRPD+ L N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.0 bits (47), Expect = 3.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 165 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLXWNAGRVG 299
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
Score = 22.6 bits (46), Expect = 5.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 325 ERXWRPDVXLLNAAATTAGDYALRXR 402
++ W+PD+ L N A G+Y +R +
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYK 128
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 22.6 bits (46), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 110 GQ*CCVFAFCRTSYSTSEEKRVTRII 33
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.8 bits (44), Expect = 9.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 316 VSSERXWRPDVXLLNAA 366
V R WRPD L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,576
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 29
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -