Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J05
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 34 0.12
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 33 0.36
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 1.1
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 31 1.4
07_03_0977 + 23092563-23092643,23092736-23092773,23092861-230930... 29 3.3
01_06_1198 + 35341375-35341635,35341750-35341953,35342151-353427... 29 3.3
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.4
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 5.8
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 7.7
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 7.7
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/98 (26%), Positives = 39/98 (39%)
Frame = +1
Query: 55 RCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLI 234
RC+ + ++ + RK T + D AKAFD V L L G PD +
Sbjct: 13 RCISENLIYATELIQACHARK-CQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISW 71
Query: 235 IRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 348
I++ L + G + G+ QG LSP +
Sbjct: 72 IKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYL 109
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 32.7 bits (71), Expect = 0.36
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 136 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 315
L D KAFD + H+ ++ + +MG P + + ++ S S + G + G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 316 VPQGSALS 339
V QG LS
Sbjct: 514 VRQGVPLS 521
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 454 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 594
SS DRS+ P P+ +R PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/95 (27%), Positives = 38/95 (40%)
Frame = +1
Query: 55 RCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLI 234
RC+ + ++ RRK T + D KAFD V + L L G P+ +
Sbjct: 1028 RCISENLIYATELIQACYRRK-CQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISW 1086
Query: 235 IRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALS 339
I+ LS+ + G R G+ QG LS
Sbjct: 1087 IKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLS 1121
>07_03_0977 +
23092563-23092643,23092736-23092773,23092861-23093088,
23093307-23093527,23093640-23093797,23093907-23094339,
23094442-23095394
Length = 703
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 558 VALRTSLRASHSVVGAQTPPPVSPITLFGQPIPWVSKVKYLGVTLDRGMTFPSPYKNXTR 737
+ L LR SH+V TP ++P ++ + + + G+ + +TF PY T
Sbjct: 174 LGLAAILRKSHAVHCVGTPEFMAP-EVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECTH 232
Query: 738 PXRVYSR 758
P ++Y +
Sbjct: 233 PVQIYKK 239
>01_06_1198 +
35341375-35341635,35341750-35341953,35342151-35342737,
35342825-35342986,35343096-35343549
Length = 555
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 609 TPPPVSPITLFGQPIPWVSKVKYLG-VTLDRGMTFPSP 719
+PPPVSP + F PI +++ +LG L FPSP
Sbjct: 56 SPPPVSPSSFFNSPI-GMNQADFLGSPVLLTSSIFPSP 92
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 428 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 562
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 280 GTRSRPRQLTAGVPQGSALSP 342
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 463 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 594
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 145 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 231
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,113,300
Number of Sequences: 37544
Number of extensions: 575818
Number of successful extensions: 1537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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