Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J05
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 64 2e-10
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 40 0.002
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 40 0.002
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.32
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 30 2.3
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 29 3.0
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +1
Query: 136 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 315
++ D +KAFD++ H+ L+ KL ++ L++ + +FLSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 316 VPQGSALSPXI 348
VPQG+ LSP +
Sbjct: 77 VPQGAVLSPLL 87
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +2
Query: 344 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 517
LLF +Y+NDI +A FADDT +Y S K LQ A+ + W + ++
Sbjct: 86 LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144
Query: 518 INPTKSAAVLFKRGR 562
+N +K+ V + R
Sbjct: 145 LNQSKTVHVTVGKRR 159
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 43.2 bits (97), Expect = 2e-04
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Frame = +1
Query: 7 EQNSHRRTVRIPAQNTRCVQQVHRLTEHILIGLNRRKQIPTGALF--FDIAKAFDKVWHN 180
E +H+ + T V QV T I+ GLN K P A+ D+ AFDKV
Sbjct: 431 ESPAHQHGFKPEHSTTTAVIQV---TNDIIGGLNM-KNPPERAIMACLDLRAAFDKVPTK 486
Query: 181 GLIYKLYN-MGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXII*F 357
L L G+ ++ L + ++L R R + S+ L GVPQGS +SP + F
Sbjct: 487 KLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTF 546
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = +2
Query: 347 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 526
LF+ Y+ D+P +T L +ADD +I +K+ ++Q+ + + ++ ++ + I+
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602
Query: 527 TKSAAVLF 550
KS +F
Sbjct: 603 EKSTVTVF 610
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 154 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGS 330
KAFD+V H+ L+ KL++ G+ DFLS+R+F +V +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 331 ALSPXI 348
P +
Sbjct: 62 VSGPFL 67
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +1
Query: 61 VQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 240
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 666 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK 723
Query: 241 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 348
+ N + + R +T GV QG +SP +
Sbjct: 724 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 758
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +1
Query: 61 VQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 240
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 405 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK 462
Query: 241 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 348
+ N + + R +T GV QG +SP +
Sbjct: 463 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 497
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +1
Query: 61 VQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 240
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 495 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLK 552
Query: 241 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 348
+ N + + R +T GV QG +SP +
Sbjct: 553 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 587
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 136 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 315
+F D KAFD V H + L G + + ++++ N + + R +T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 316 VPQGSALSPXI 348
V QG +SP +
Sbjct: 99 VRQGDPISPNL 109
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 193 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPXI 348
KL G+ ++FL NR+F ++ S+ +++GVPQGS P +
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +2
Query: 200 TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLVPVN*P-----PESRKAPRSPRLLFSLY 361
TT TD S + T+ TV IE ELV P++ P P ++ P+ +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376
Query: 362 INDIPRSPETHLALFADDTAIYYSCRKMSL 451
I I L LF+ AIY+ C+ S+
Sbjct: 377 IPLIIMGSLASLLLFSAGAAIYFGCKLKSM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,319
Number of Sequences: 27780
Number of extensions: 444683
Number of successful extensions: 1292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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