Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_J01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   202   7e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   201   9e-53
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  202 bits (492), Expect = 7e-53
 Identities = 109/252 (43%), Positives = 149/252 (59%), Gaps = 2/252 (0%)
 Frame = +3

Query: 18  MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRYDPRWLEN 197
           MSH KF  PR    G L +K         +  P+    +      F           + +
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMT-HIVRD 59

Query: 198 LTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 377
           L  P SK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFY
Sbjct: 60  LDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119

Query: 378 KNWYKCXKKAFTKAXXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRXXXAH 557
           KNW+K  KKAFTK   K+ +    +SI ++   + +YCSVVRV+AHTQ++        AH
Sbjct: 120 KNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177

Query: 558 IMEIQLNGGTIXDKXKWATXHLEKPILSILCLPX*ND*LH--WCXKGXGYKGVTSPWHTX 731
           +MEIQ+NGG++ DK +WA  H EK +  I      N+ +      +G G +G T+ W T 
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTV-DIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTK 236

Query: 732 NLPRXKHKGFKE 767
            LPR  H+G ++
Sbjct: 237 RLPRKTHRGLRK 248



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 661 EMIDCIGVXRAKDTKVSLLLGTQXTYPVXNTRVLRKXACIG 783
           EMID IGV R K  + +         P    R LRK ACIG
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIG 253


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  201 bits (491), Expect = 9e-53
 Identities = 108/252 (42%), Positives = 149/252 (59%), Gaps = 2/252 (0%)
 Frame = +3

Query: 18  MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCFYRL*GRYDPRWLEN 197
           MSH KF  PR    G L +K         +  P+    +      F           + +
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMT-HIVRD 59

Query: 198 LTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFY 377
           L  P SK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFY
Sbjct: 60  LDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119

Query: 378 KNWYKCXKKAFTKAXXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRXXXAH 557
           KNW+K  KKAFTK   K+ +    +SI ++   + +YCSVVRV+AHTQ++        AH
Sbjct: 120 KNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177

Query: 558 IMEIQLNGGTIXDKXKWATXHLEKPILSILCLPX*ND*LH--WCXKGXGYKGVTSPWHTX 731
           +MEIQ+NGG++ DK +WA  H EK +  I      N+ +      +G G +G T+ W T 
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTV-DIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTK 236

Query: 732 NLPRXKHKGFKE 767
            LPR  H+G ++
Sbjct: 237 RLPRKTHRGLRK 248



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 661 EMIDCIGVXRAKDTKVSLLLGTQXTYPVXNTRVLRKXACIG 783
           EMID IGV R K  + +         P    R LRK ACIG
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIG 253


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 22  RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 141
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,732
Number of Sequences: 5004
Number of extensions: 62215
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)