Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_J01
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 196 1e-50
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 195 4e-50
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 29 6.4
09_01_0170 - 2459344-2459493,2459720-2459784,2459905-2459963,246... 28 8.4
06_03_0809 + 24814590-24816593 28 8.4
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 196 bits (479), Expect = 1e-50
Identities = 110/255 (43%), Positives = 149/255 (58%), Gaps = 5/255 (1%)
Frame = +3
Query: 18 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRWL 191
MSHRKF PR G L +K + P+ + C F Y+ + R +
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 192 ENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRR 371
E P SK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRR
Sbjct: 61 EK---PGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRR 117
Query: 372 FYKNWYKCXKKAFTKAXXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLK-QRXX 548
FYKNW K KKAFTK K+ + G+K I M +Y S+VRVIAHTQ++ +K +
Sbjct: 118 FYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQK 177
Query: 549 XAHIMEIQLNGGTIXDKXKWATXHLEK--PILSILCLPX*ND*LHWCXKGXGYKGVTSPW 722
AH+MEIQ+NGGTI DK + EK P+ ++ D + KG GY+GV + W
Sbjct: 178 KAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMID-IIGVTKGKGYEGVVTRW 236
Query: 723 HTXNLPRXKHKGFKE 767
LPR H+G ++
Sbjct: 237 GVTRLPRKTHRGLRK 251
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 195 bits (475), Expect = 4e-50
Identities = 110/255 (43%), Positives = 148/255 (58%), Gaps = 5/255 (1%)
Frame = +3
Query: 18 MSHRKFSAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRWL 191
MSHRKF PR G L +K + P+ + C F Y+ + R +
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 192 ENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRR 371
E P SK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRR
Sbjct: 61 EK---PGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRR 117
Query: 372 FYKNWYKCXKKAFTKAXXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLK-QRXX 548
FYKNW K KKAFTK K+ + G+K I M +Y SVVRVI HTQ++ +K +
Sbjct: 118 FYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQK 177
Query: 549 XAHIMEIQLNGGTIXDKXKWATXHLEK--PILSILCLPX*ND*LHWCXKGXGYKGVTSPW 722
AH+MEIQ+NGGTI DK + EK P+ ++ D + KG GY+GV + W
Sbjct: 178 KAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMID-IIGVTKGKGYEGVVTRW 236
Query: 723 HTXNLPRXKHKGFKE 767
LPR H+G ++
Sbjct: 237 GVTRLPRKTHRGLRK 251
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 455 NXKRFQXXDPLL*CCKSHCPHSNEAVKTATKXXSHYGNP 571
N +RF DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 366 RRFYKNWYKCXKKAFTKAXXKWQDELGRKSIXKDFXXMIRYC 491
RRF + KC K + ++ +LGR + K+F +IR C
Sbjct: 163 RRFTRLMQKCADKLGAEPALEFFGKLGRDTGAKEFNALIRIC 204
>09_01_0170 -
2459344-2459493,2459720-2459784,2459905-2459963,
2460441-2460487,2460793-2460894,2461810-2461935,
2462035-2462169,2463396-2463512,2463583-2463714
Length = 310
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 189 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALL 329
LE V +S KK + EAV + + VGVV ++ P + L+
Sbjct: 32 LEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVCHVSIPEQRKNLI 78
>06_03_0809 + 24814590-24816593
Length = 667
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 YWGLPACRTENFQHPAHGSMGFYP 72
Y GL C+ Q+PAH S+ YP
Sbjct: 142 YQGLTTCQALMAQNPAHDSLDLYP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,214,570
Number of Sequences: 37544
Number of extensions: 441899
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -