Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_I24
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1246 - 25559601-25560026,25560031-25560576                       30   2.0  
11_01_0114 - 886404-887111                                             28   8.3  

>08_02_1246 - 25559601-25560026,25560031-25560576
          Length = 323

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 634 VLLCKEPLSIIPDAVLLITAPMISSPVFTLSKKCXNLAVLSTFKNVSNGGINAY 473
           V LC+EP  ++      +   M SS   T    C ++AV ST       GI AY
Sbjct: 163 VYLCREPKDVVVSTWHFMNKAMASSSTSTRPSSCSSMAVPST----GRSGITAY 212


>11_01_0114 - 886404-887111
          Length = 235

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 420 TPSSSTNGTXTLVPEXNLYALMPPFETFLNVDKTAR 527
           T +++ NG+ +++P   + A  PPF T  + D  +R
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESR 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,897,181
Number of Sequences: 37544
Number of extensions: 349182
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)