Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_I11
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   4.5  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 859 PXPPPPXXXXXKTXKNKXTHPXXXN 785
           P PPPP     KT  N  +HP   N
Sbjct: 905 PTPPPPPPLPVKTSLNTFSHPDSVN 929


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 4.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 868 PXPPXPPPPXXXXXKTXKNKXTHP 797
           P PP PPPP      T  ++   P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP 259



 Score = 20.6 bits (41), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 880 KXXXPXPPXPPPP 842
           K   P P  PPPP
Sbjct: 230 KQADPLPAPPPPP 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,783
Number of Sequences: 5004
Number of extensions: 16067
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)