Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_I11
(927 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 40 0.003
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 33 0.38
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.7
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 39.9 bits (89), Expect = 0.003
Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Frame = -1
Query: 663 PXKXPXPXGXXKKPPXTXXXPPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPXXPP 484
P P P K P P P+ K K + K KP P + K + KP P
Sbjct: 161 PNPKPEPKPKPKPEPKPKPKPDPKPKPKP-KPKPKPKPNPKPEPKPKPKPEPKPKPKPEP 219
Query: 483 X-XPKPKXXXXQKKXXXXKXAPPXKNPXXXLPPPK 382
PKPK K K P K P PK
Sbjct: 220 KPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPK 254
Score = 37.5 bits (83), Expect = 0.013
Identities = 31/123 (25%), Positives = 37/123 (30%), Gaps = 2/123 (1%)
Frame = -1
Query: 744 KKKXPPTKKXGXRXKKXXXXXXPXGXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXX-KX 568
K K P K + K P P P K P P P+ K K
Sbjct: 156 KLKSKPNPKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKP 215
Query: 567 RXKKKPPPXXQKKXXXXXKXXXKPXXPPX-XPKPKXXXXQKKXXXXKXAPPXKNPXXXLP 391
+ + KP P + K KP P PKPK K + P K P
Sbjct: 216 KPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKP 275
Query: 390 PPK 382
PK
Sbjct: 276 NPK 278
Score = 37.5 bits (83), Expect = 0.013
Identities = 31/123 (25%), Positives = 37/123 (30%)
Frame = -1
Query: 750 KXKKKXPPTKKXGXRXKKXXXXXXPXGXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXXK 571
K K P K K P P P K P P P+ K +
Sbjct: 160 KPNPKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKP-E 218
Query: 570 XRXKKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKXXXXQKKXXXXKXAPPXKNPXXXLP 391
+ K KP P + K K KP P PKP+ K K P K P
Sbjct: 219 PKPKPKPKPKPKPKPNPNPKPEPKPKPKP-KPKPEPKPKTKLKSEPKPKPKLKPKPKPNP 277
Query: 390 PPK 382
P+
Sbjct: 278 KPE 280
Score = 36.3 bits (80), Expect = 0.031
Identities = 31/100 (31%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Frame = -1
Query: 663 PXKXPXPXGXXKKPPXTXXXPPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPXXPP 484
P P P K P P P+ K K + K KP P K K KP P
Sbjct: 195 PKPNPKPEPKPKPKPEPKPKPKPEPK-PKPKPKPKPKPKPNPNPKPEPKPKPKPKP-KPE 252
Query: 483 XXPKPKXXXXQKKXXXXKXAP-----PXKNPXXXL-PPPK 382
PK K K K P P NP L P PK
Sbjct: 253 PKPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPK 292
Score = 33.5 bits (73), Expect = 0.22
Identities = 34/138 (24%), Positives = 38/138 (27%), Gaps = 1/138 (0%)
Frame = -1
Query: 639 GXXKKPPXTXXXPPPQKKXXXX-KXRXKKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKX 463
G K P P P+ + K K KP P + K K KP P PKPK
Sbjct: 149 GVLKNEPKLKSKPNPKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPKP-EPKPK- 206
Query: 462 XXXQKKXXXXKXAPPXKNPXXXLPPPKXX*KXGAXXXXXXXXXXXXXXXXXXXXXKKKPP 283
K K P K P PK K P
Sbjct: 207 ---PKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEP 263
Query: 282 PPXXXKKXXPXPXTKXKP 229
P K P P K +P
Sbjct: 264 KPKPKLKPKPKPNPKPEP 281
Score = 32.3 bits (70), Expect = 0.51
Identities = 28/126 (22%), Positives = 36/126 (28%), Gaps = 3/126 (2%)
Frame = -1
Query: 750 KXKKKXPPTKKXGXRXKKXXXXXXPXGXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXXK 571
K K P K K P P P P P P+ K K
Sbjct: 196 KPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPK-PEPK 254
Query: 570 XRXKKKPPPXXQKKXXXXXKXXXKP---XXPPXXPKPKXXXXQKKXXXXKXAPPXKNPXX 400
+ K K P + K K KP P PKPK + + P ++
Sbjct: 255 PKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPN 314
Query: 399 XLPPPK 382
P P+
Sbjct: 315 PKPKPR 320
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.38
Identities = 39/182 (21%), Positives = 51/182 (28%), Gaps = 8/182 (4%)
Frame = -2
Query: 908 AGXKXPPPXKKXGXPXPXXT--PPXXXXKXNTXKQXXPPPXXXPXRXGGGPXXXKXTKKK 735
A + PPP K G P P T P + N ++ PPP G G T +
Sbjct: 29 ASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPP------KGTGTPPPPPTGE- 81
Query: 734 XPQXKKXGXGXKKXKXXXXPXA----XPPXXXXXXXXXXKNPPXRXPXPPPK--KKXPXX 573
PQ G + P PP + R P PPPK P
Sbjct: 82 -PQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 140
Query: 572 XXXXXXXXXXXXXXNXXXXXKXXXNXXXPPXPQNQKXXXXKKXXXXKKXPPXKKTQXTXF 393
+ PP P + + ++ PP K T
Sbjct: 141 PTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPP 200
Query: 392 PP 387
PP
Sbjct: 201 PP 202
Score = 30.3 bits (65), Expect = 2.0
Identities = 28/110 (25%), Positives = 33/110 (30%), Gaps = 4/110 (3%)
Frame = -2
Query: 908 AGXKXPPPXKKXGXPXPXXTPPXXXXKXNTXKQXXPPPXXXPXRXGGGPXXXKXTKKKXP 729
A + PPP K G P P T PPP P + G P + P
Sbjct: 185 ASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPP---PPKGTGSPTPPPTGE---P 238
Query: 728 QXKKXGXGXKKXKXXXXPXA----XPPXXXXXXXXXXKNPPXRXPXPPPK 591
Q G G + P PP + R P PPPK
Sbjct: 239 QDLS-GEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPK 287
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/97 (26%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Frame = -1
Query: 651 PXPXGXXKKPPXTXXXPPPQKKXXXXKXRXKKKPPPXXQKK---XXXXXKXXXKPXXPPX 481
P P PP T PPP K PPP K+ K P
Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPN 234
Query: 480 XPKPKXXXXQ-KKXXXXKXAP----PXKNPXXXLPPP 385
P P+ + + K AP P NP PPP
Sbjct: 235 PPAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPP 271
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/96 (23%), Positives = 24/96 (25%)
Frame = -1
Query: 672 GXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPX 493
G P P P G PP PPP PPP P
Sbjct: 294 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP---PPPGMRYPGGMPPP 350
Query: 492 XPPXXPKPKXXXXQKKXXXXKXAPPXKNPXXXLPPP 385
PP P APP + PPP
Sbjct: 351 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/96 (23%), Positives = 24/96 (25%)
Frame = -1
Query: 672 GXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPX 493
G P P P G PP PPP PPP P
Sbjct: 304 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP---PPPGMRYPGGMPPP 360
Query: 492 XPPXXPKPKXXXXQKKXXXXKXAPPXKNPXXXLPPP 385
PP P APP + PPP
Sbjct: 361 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/73 (20%), Positives = 21/73 (28%)
Frame = -1
Query: 603 PPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKXXXXQKKXXXXKXA 424
PPP + PPP + P PP P + +
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181
Query: 423 PPXKNPXXXLPPP 385
P + P +PPP
Sbjct: 182 NPPRTPPSPIPPP 194
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 29.5 bits (63), Expect = 3.6
Identities = 41/184 (22%), Positives = 53/184 (28%), Gaps = 12/184 (6%)
Frame = -1
Query: 900 KKXPXXX-KXGXPXPXXHPPXKXXXXKHXKTXXPTPXXXT-----PXXXXGXXXFXKXKK 739
KK P K P P P K +H PTP P + K+
Sbjct: 173 KKEPAAAAKPRDPSPKKAAPSK----EHDPIVPPTPIKNPAKKWKPPWEDDEVPTEEIKE 228
Query: 738 KXPPTKKX-GXRXKKXXXXXXPXGXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXXKXRX 562
P T+K + K+ P P + P T P +K +
Sbjct: 229 PEPATRKVPALKKKEPSTSVKPVSDPSPTKKVPVKKEPEVPPTPIKNPTKKWKPPWEDET 288
Query: 561 ---KKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKXXXXQKKXXXXKXAP--PXKNPXXX 397
+ K PP +KK K P P P +K P P KNP
Sbjct: 289 PVEEVKEPPVPEKKAPVLKKKDPAPAAKARDPSPSKAAPKKVEPSSPVVPPTPVKNPVKK 348
Query: 396 LPPP 385
PP
Sbjct: 349 YKPP 352
Score = 28.7 bits (61), Expect = 6.2
Identities = 28/128 (21%), Positives = 33/128 (25%), Gaps = 8/128 (6%)
Frame = -1
Query: 744 KKKXPPTKKXGXRXKKXXXXXXPXGXXPXKXPXPXGXXKKPPXTXXXPPPQKKXXXXKXR 565
K + P KK P K P P P P+KK +
Sbjct: 766 KSRDPSPKKAKAEPNSPVVPPTPVKNPVKKWKPPWEDDDAPAEPVNVPEPEKKTPVLAKK 825
Query: 564 XKKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKXXXXQKKXXXXKXAP--------PXKN 409
KP KK P KP+ K+ K P P KN
Sbjct: 826 TPVKPRDPSPKKAVPAKPSTKTDAPPVSVKKPEPVSKPKEPSPKKAEPNSPVVPPTPVKN 885
Query: 408 PXXXLPPP 385
P PP
Sbjct: 886 PVKKWKPP 893
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/87 (19%), Positives = 27/87 (31%)
Frame = -1
Query: 621 PXTXXXPPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKXXXXQKKX 442
P T PPP + + +++ P + + PP P P +
Sbjct: 721 PKTPPPPPPMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIPPPPPPPPPPHCEPTM 780
Query: 441 XXXKXAPPXKNPXXXLPPPKXX*KXGA 361
+ PP + PPP GA
Sbjct: 781 VHVEFTPPSTSSVPPPPPPLPPISSGA 807
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/87 (19%), Positives = 27/87 (31%)
Frame = -1
Query: 621 PXTXXXPPPQKKXXXXKXRXKKKPPPXXQKKXXXXXKXXXKPXXPPXXPKPKXXXXQKKX 442
P T PPP + + +++ P + + PP P P +
Sbjct: 721 PKTPPPPPPMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIPPPPPPPPPPHCEPTM 780
Query: 441 XXXKXAPPXKNPXXXLPPPKXX*KXGA 361
+ PP + PPP GA
Sbjct: 781 VHVEFTPPSTSSVPPPPPPLPPISSGA 807
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,990,257
Number of Sequences: 27780
Number of extensions: 185915
Number of successful extensions: 1818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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