Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_I07
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   0.93 
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   8.7  

>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 153 ESISLQSGMLSPTPQLQGGSSDINQCQE 236
           E++ L +G L P P+ + G SDIN+ +E
Sbjct: 901 EALDLINGFLQPNPERRLGFSDINEIKE 928


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 78  FCQSSDYERALKAAGQNTADSTK*AESISLQSGMLSPTPQLQGGSSDINQCQELSVSSR 254
           FCQ +D ERALK    +  D     E   +     +    +     DIN+   + VS R
Sbjct: 743 FCQQNDIERALKMVRVHGPDQ---QELYIMMLNCFASLENVDSWYQDINEIVNIIVSQR 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,798
Number of Sequences: 5004
Number of extensions: 34117
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)