Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_I07
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    47   2e-05
04_04_1153 - 31294014-31294095,31294180-31294261,31294422-312948...    29   6.9  
03_05_0505 + 24991699-24991921,24992100-24992665                       28   9.2  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 29/85 (34%), Positives = 46/85 (54%)
 Frame = +1

Query: 112 KLQGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAADLLFEKAYTQYRL 291
           K+  ++L  AP ++ A  CKVV  ++    ++ALA +  A+   L  DL + KAY  YR 
Sbjct: 43  KVADQVLAAAPGDEDAVRCKVVAHIKSDAIEKALAAIRAAER--LPIDLSYCKAYCYYRQ 100

Query: 292 NSPKEALQTVDSAPELTPALKELRA 366
           N  +EAL  +    E T A+ +L +
Sbjct: 101 NKLQEALDLLKGQEE-TSAILQLES 124


>04_04_1153 -
           31294014-31294095,31294180-31294261,31294422-31294857,
           31295124-31295312,31296190-31296360
          Length = 319

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 142 PNEQKAFHC-KVVCFLQLHNFKEALATLTNA-KNSALAADLLFEKAYTQYRLNSPKEALQ 315
           P ++ A H  +  C+L+LH+F +A    T+  +     A  L  +A T   L   + AL 
Sbjct: 35  PAQRIALHSNRAACYLKLHDFHKAAEECTSVLELDREHAGALMLRAQTLVTLKDYQSALF 94

Query: 316 TVDSAPELTPALKELR 363
            V+   E+ P+ +  R
Sbjct: 95  DVNRLIEINPSSEVYR 110


>03_05_0505 + 24991699-24991921,24992100-24992665
          Length = 262

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 545 WXSSGSRQXXGWIKGXXKLGTTXGXVG 465
           W + G++Q  GW       GTT G VG
Sbjct: 141 WPTEGAQQLVGWPAATGDRGTTGGCVG 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,429
Number of Sequences: 37544
Number of extensions: 230854
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)