Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_I06
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 29 4.8
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 4.8
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 29 4.8
11_06_0286 + 21945699-21946213,21946255-21947542 29 6.3
11_06_0732 - 26740718-26741704,26741876-26742478 28 8.4
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 28 8.4
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 28 8.4
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 28 8.4
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.4
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 362 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 514
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 207 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 323
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 745 RAXSRSTHGGTRRPPASACXRGGSPGKTXGTCQRELPPXHGXG 617
RA SRST +R PPA+ RG S G G R + +G G
Sbjct: 83 RAGSRSTVPPSRPPPAAGGGRGRSRGGRGGGRGRGMSLTNGAG 125
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 309 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 145
H P AAA P VP++ P L + GG GL S S + G + D G+ G
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 745 RAXSRSTHGGTRRPPASACXRGGSPGKTXGTCQRELPPXHGXG 617
RA SRST +R PPA+ RG S G G R + +G G
Sbjct: 62 RAGSRSTVPPSRPPPAAGGGRGRSRGGRGGGRGRGMSLTNGAG 104
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 685 RGGSPGKTXGTCQRELPPXHGXGXAPH 605
RGG P K TC+ ++PP H
Sbjct: 61 RGGKPDKNQATCEPDVPPDKNQATGEH 87
>11_06_0732 - 26740718-26741704,26741876-26742478
Length = 529
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 745 RAXSRSTHGGTRRPPASACXRGGSPGKTXGTCQRELPPXHGXG 617
RA SRST +R PPA+ RG S G G R +G G
Sbjct: 83 RAGSRSTVPPSRPPPAAGGGRGSSRGGRGGGRGRGRSLTNGAG 125
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 745 RAXSRSTHGGTRRPPASACXRGGSPGKTXGTCQRELPPXHGXG 617
RA SRST +R PPA+ RG S G G R +G G
Sbjct: 83 RAGSRSTVPPSRPPPAAGGGRGSSRGGRGGGRGRGRSLTNGAG 125
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 745 RAXSRSTHGGTRRPPASACXRGGSPGKTXGTCQRELPPXHGXG 617
RA SRST +R PPA+ RG S G G R +G G
Sbjct: 83 RAGSRSTVPPSRPPPAAGGGRGSSRGGRGGGRGRGRSLTNGAG 125
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 745 RAXSRSTHGGTRRPPASACXRGGSPGKTXGTCQRELPPXHGXG 617
RA SRST +R PPA+ RG S G G R +G G
Sbjct: 83 RAGSRSTVPPSRPPPAAGGGRGSSRGGRGGGRGRGRSLTNGAG 125
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 706 PPASACXRGGSPGKTXGTCQRELPPXHGXG 617
PPA C G G+ G+C + L G G
Sbjct: 104 PPAGRCEEGSEEGEVSGSCVKGLSTDGGRG 133
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 336 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 169
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,929,303
Number of Sequences: 37544
Number of extensions: 556669
Number of successful extensions: 1696
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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