Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_I02
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   254   9e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   250   8e-67
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.2  
01_06_0613 + 30615335-30615980,30616072-30616231,30616350-306163...    29   6.2  
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    28   8.2  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   8.2  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  254 bits (621), Expect = 9e-68
 Identities = 117/199 (58%), Positives = 148/199 (74%)
 Frame = +3

Query: 51  ISATMSGGLDVLALNEEDVTKMLAATTHLGAESVNFQMETYVYKRRADGTHVINLRRTWE 230
           ++A   G    L+  E+DV  MLAA  HLG ++ +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 231 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 410
           KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 411 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 590
            EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180

Query: 591 LLAREVLRLRGVLPRDQRW 647
           LLAR VL++RG +    +W
Sbjct: 181 LLARMVLQMRGTILPGHKW 199


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  250 bits (613), Expect = 8e-67
 Identities = 114/188 (60%), Positives = 142/188 (75%)
 Frame = +3

Query: 84  LALNEEDVTKMLAATTHLGAESVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVX 263
           L+  E+D+  MLAA  HLG ++ +FQME YVYKRR DG ++INL +TWEKL LAAR +V 
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 443
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 444 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 623
             DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191

Query: 624 VLPRDQRW 647
            +    +W
Sbjct: 192 TILPGHKW 199


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 329 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 436
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>01_06_0613 +
           30615335-30615980,30616072-30616231,30616350-30616398,
           30617561-30617674,30617975-30618031,30618227-30618337
          Length = 378

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/16 (81%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = -3

Query: 649 PQRW-SRGSTPRSLST 605
           PQRW S G+TPRSLST
Sbjct: 9   PQRWGSAGTTPRSLST 24


>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 158 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXH 265
           P   +C+ T C    C        K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 22/78 (28%), Positives = 27/78 (34%)
 Frame = +2

Query: 104 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXHREPR*C 283
           CH   C   P  GR+   P G     +      CD  A+  G TC     C  H+ P  C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378

Query: 284 VRHLITALRSACCTEVCR 337
            R           T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,544,030
Number of Sequences: 37544
Number of extensions: 563002
Number of successful extensions: 1407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)